RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 TRAF4Q9BUZ4 470 aaPredicted RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 LINC00470Q9BZP3 86 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SRA1Q9HD15 236 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 FANCFQ9NPI8 374 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 POMPQ9Y244 141 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 A0A1W2PPL8 197 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR6C68A6NDL8 312 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 FAM183AA6NL82 134 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 WNT9BO14905 357 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SMPD2O60906 423 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 MMP7P09237 267 aaPredicted RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR4A8P0C604 315 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SELEP16581 610 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF32P17041 273 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 WNT5AP41221 380 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SRSF2Q01130 221 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 GLO1Q04760 184 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 GSG1Q2KHT4 349 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZBED5Q49AG3 693 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR7E24Q6IFN5 339 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 C16orf89Q6UX73 402 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 BCDIN3DQ7Z5W3 292 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 DHFR2Q86XF0 187 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR6V1Q8N148 313 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ADPRHL1Q8NDY3 354 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 RSRC1Q96IZ7 334 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF416Q9BWM5 594 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 MRPL37Q9BZE1 423 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR52D1Q9H346 318 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 TXNIPQ9H3M7 391 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ARMC1Q9NVT9 282 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 DCAF16Q9NXF7 216 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ACTR3BQ9P1U1 418 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SAMD4AQ9UPU9 718 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 COA3Q9Y2R0 106 aaPredicted RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 RER1O15258 196 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 GSC2O15499 205 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 TIPRLO75663 272 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 CNOT4O95628 575 aaKnown RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 NAT2P11245 290 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 PPP3CBP16298 524 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 RBM34P42696 430 aaKnown RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 FABP6P51161 128 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 RPL27P61353 136 aaKnown RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 PSG4Q00888 419 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 KRTAP1-1Q07627 177 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 BNIP1Q12981 228 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 SNTB2Q13425 540 aaKnown RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 ENDOGQ14249 297 aaKnown RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 SLC25A47Q6Q0C1 308 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 TMPRSS11FQ6ZWK6 438 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 LINC00346Q8IVM7 164 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 OR9Q1Q8NGQ5 310 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 OR4Q3Q8NH05 313 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 CHID1Q9BWS9 393 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 SLC19A3Q9BZV2 496 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 MAGEL2Q9UJ55 1249 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 CACNG2Q9Y698 323 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 SLC22A23A1A5C7 686 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 GYG2O15488 501 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 DOK2O60496 412 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 SLC16A7O60669 478 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 MITFO75030 526 aaPredicted RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 IGHG1P01857 330 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF35P13682 527 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 CD99P14209 185 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 IL2RGP31785 369 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 PYCR1P32322 319 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 TGFBR3Q03167 851 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 PABPC1L2AQ5JQF8 200 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 C1orf94Q6P1W5 598 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 TMEM171Q8WVE6 324 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 LIPHQ8WWY8 451 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 VRK1Q99986 396 aaPredicted RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 NTN4Q9HB63 628 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 RPS6KA6Q9UK32 745 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 POFUT2Q9Y2G5 429 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 A0A1W2PRG6 482 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 TVP23AA6NH52 213 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 LILRA1O75019 489 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 LY6G6DO95868 133 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 MPV17P39210 176 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 TRIP10Q15642 601 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 LCN8Q6JVE9 175 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 TMEM154Q6P9G4 183 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 LINC00471Q8N535 108 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 ARIH2OSQ8N7S6 290 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 AQP11Q8NBQ7 271 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 ERMAPQ96PL5 475 aaPredicted RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 NARFLQ9H6Q4 476 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 NRIP3Q9NQ35 241 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 RPRD1BQ9NQG5 326 aaKnown RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 DUSP13Q9UII6 198 aa4.91□□□□□ -1.62
CPNE3-208ENST00000614678 FAM32AQ9Y421 112 aaKnown RBP4.91□□□□□ -1.62
CPNE3-208ENST00000614678 LRP5LA4QPB2 252 aa4.9□□□□□ -1.62
CPNE3-208ENST00000614678 UNC119BA6NIH7 251 aa4.9□□□□□ -1.62
CPNE3-208ENST00000614678 TNFRSF11BO00300 401 aa4.9□□□□□ -1.62
CPNE3-208ENST00000614678 TFP02787 698 aa4.9□□□□□ -1.62
CPNE3-208ENST00000614678 PTAFRP25105 342 aa4.9□□□□□ -1.62
CPNE3-208ENST00000614678 POLR2IP36954 125 aaKnown RBP4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms