RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 PYCR1P32322 319 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 CD79BP40259 229 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 FOXG1P55316 489 aaPredicted RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 MRPS34P82930 218 aaKnown RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 ARF1P84077 181 aaKnown RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 HSF2Q03933 536 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 APOFQ13790 326 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 FBXL19-AS1Q494R0 122 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 NRN1LQ496H8 165 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 SFRP5Q5T4F7 317 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 LCN1P1Q5VSP4 162 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 C9orf135Q5VTT2 229 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 ANKRD16Q6P6B7 361 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 ZNF627Q7L945 461 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 BCDIN3DQ7Z5W3 292 aaKnown RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 CXorf67Q86X51 503 aaPredicted RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 BBS1Q8NFJ9 593 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 OR51L1Q8NGJ5 315 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 OR6K6Q8NGW6 343 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 ITLN2Q8WWU7 325 aaPredicted RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 KISS1RQ969F8 398 aaPredicted RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 ZNF582Q96NG8 517 aaPredicted RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 TEAD3Q99594 435 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 TMEM38BQ9NVV0 291 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 DNAJC27Q9NZQ0 273 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.93□□□□□ -0.34
CD48-203ENST00000613788 UGT2A1Q9Y4X1 527 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 SH3D21A4FU49 640 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 ENTPD6O75354 484 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 LYZL6O75951 148 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 AGFG2O95081 481 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 FARS2O95363 451 aaKnown RBP12.92□□□□□ -0.34
CD48-203ENST00000613788 PSMB1P20618 241 aaKnown RBP12.92□□□□□ -0.34
CD48-203ENST00000613788 SLC2A5P22732 501 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 CDH11P55287 796 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 TEKQ02763 1124 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 CDK5R2Q13319 367 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 TMED1Q13445 227 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 SGCAQ16586 387 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 KRT80Q6KB66 452 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 STAC2Q6ZMT1 411 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 ZNF813Q6ZN06 617 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 FOXL2NBQ6ZUU3 175 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 C1orf162Q8NEQ5 155 aaPredicted RBP12.92□□□□□ -0.34
CD48-203ENST00000613788 OR1K1Q8NGR3 316 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 CNBD2Q96M20 576 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 USB1Q9BQ65 265 aaKnown RBP12.92□□□□□ -0.34
CD48-203ENST00000613788 NELFAQ9H3P2 528 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 SIAEQ9HAT2 523 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 WARS2Q9UGM6 360 aaKnown RBP12.92□□□□□ -0.34
CD48-203ENST00000613788 LRRC42Q9Y546 428 aa12.92□□□□□ -0.34
CD48-203ENST00000613788 INTS1Q8N201 2190 aaKnown RBP12.91□□□□□ -0.34
CD48-203ENST00000613788 C16orf97H3BN30 126 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 HRGP04196 525 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 OR8G3PP0DMU2 310 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 HOXB1P14653 301 aaPredicted RBP12.91□□□□□ -0.34
CD48-203ENST00000613788 ZNF823P16415 610 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 MSR1P21757 451 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 IL32P24001 234 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 GSTT1P30711 240 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 HTR1FP30939 366 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 CDAP32320 146 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 FAM27E3Q08E93 113 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 MED21Q13503 144 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 GABRA6Q16445 453 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 LINC01590Q5TEZ4 76 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 BHLHA15Q7RTS1 189 aaPredicted RBP12.91□□□□□ -0.34
CD48-203ENST00000613788 SLC22A24Q8N4F4 322 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 STEAP2Q8NFT2 490 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 OR10H5Q8NGA6 315 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 CNIH3Q8TBE1 160 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 FBLIM1Q8WUP2 373 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 ZNRF4Q8WWF5 429 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 RNASE6Q93091 150 aaKnown RBP12.91□□□□□ -0.34
CD48-203ENST00000613788 BOD1Q96IK1 185 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 KCNN2Q9H2S1 579 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 POLE4Q9NR33 117 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 GALNT8Q9NY28 637 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 AASSQ9UDR5 926 aa12.91□□□□□ -0.34
CD48-203ENST00000613788 WBP4O75554 376 aaKnown RBP12.9□□□□□ -0.34
CD48-203ENST00000613788 RAD51DO75771 328 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 B4GALT1P15291 398 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 HOXC12P31275 282 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 LSM6P62312 80 aaKnown RBP12.9□□□□□ -0.34
CD48-203ENST00000613788 CSNK2BP67870 215 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 DBPQ10586 325 aaPredicted RBP12.9□□□□□ -0.34
CD48-203ENST00000613788 KCNMB1Q16558 191 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 FAM27BQ5VT28 67 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 CCDC36Q8IYA8 594 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 C17orf78Q8N4C9 275 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 SLC26A10Q8NG04 563 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 APH1BQ8WW43 257 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 BCL2L2Q92843 193 aaPredicted RBP12.9□□□□□ -0.34
CD48-203ENST00000613788 ZMYND19Q96E35 227 aaPredicted RBP12.9□□□□□ -0.34
CD48-203ENST00000613788 FOXN4Q96NZ1 517 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 CDADC1Q9BWV3 514 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 OR10A4Q9H209 315 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 HAO2Q9NYQ3 351 aa12.9□□□□□ -0.34
CD48-203ENST00000613788 RPL36Q9Y3U8 105 aaKnown RBP12.9□□□□□ -0.34
CD48-203ENST00000613788 RELNP78509 3460 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms