RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TVP23AA6NH52 213 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 C12orf71A8MTZ7 269 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF587BE7ETH6 402 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 SLC19A2O60779 497 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 UPK3AO75631 287 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 APOL3O95236 402 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 CNOT4O95628 575 aaKnown RBP13.48□□□□□ -0.25
TRIM28-209ENST00000597423 HTR1AP08908 422 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 TACSTD2P09758 323 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 TTKP33981 857 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 NAA10P41227 235 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-209ENST00000597423 LSM6P62312 80 aaKnown RBP13.48□□□□□ -0.25
TRIM28-209ENST00000597423 ACTA2P62736 377 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 ACTG2P63267 376 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 GALEQ14376 348 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 IRF3Q14653 427 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 NEDD8Q15843 81 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 KCNMB1Q16558 191 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 SGCAQ16586 387 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 SLC18B1Q6NT16 456 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 LHFPL3Q86UP9 236 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 NANOGP1Q8N7R0 232 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 C9orf106Q8NAJ2 232 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 ST6GALNAC3Q8NDV1 305 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 SLC26A10Q8NG04 563 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 OR6K3Q8NGY3 331 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 OR6N2Q8NGY6 317 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 OR2AJ1Q8NGZ0 328 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 SNX33Q8WV41 574 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 ZNRF4Q8WWF5 429 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 CNTNAP3BQ96NU0 1288 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 CNTNAP3Q9BZ76 1288 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 KCNN2Q9H2S1 579 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 CRLF2Q9HC73 371 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 GPR35Q9HC97 309 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 ERVK13-1Q9NX77 482 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 CAB39Q9Y376 341 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-209ENST00000597423 MGAQ8IWI9 3026 aa13.48□□□□□ -0.25
TRIM28-209ENST00000597423 CFAP47Q6ZTR5 3102 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF407Q9C0G0 2248 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF99A8MXY4 864 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-209ENST00000597423 RPL36A-HNRNPH2H7BZ11 118 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 ZNHIT1O43257 154 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 SELENOFO60613 162 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 FARS2O95363 451 aaKnown RBP13.47□□□□□ -0.25
TRIM28-209ENST00000597423 NTF4P34130 210 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 MAP2K4P45985 399 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 OR3A2P47893 321 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 ETV1P50549 477 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 MRPS34P82930 218 aaKnown RBP13.47□□□□□ -0.25
TRIM28-209ENST00000597423 ROR2Q01974 943 aaKnown RBP13.47□□□□□ -0.25
TRIM28-209ENST00000597423 SPHARQ15513 63 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 NRN1LQ496H8 165 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 FBXW9Q5XUX1 488 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 TMEM211Q6ICI0 200 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 KCTD18Q6PI47 426 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-209ENST00000597423 PLXDC2Q6UX71 529 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 PLEKHG7Q6ZR37 379 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 ZNF367Q7RTV3 350 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 NUFIP2Q7Z417 695 aaKnown RBP13.47□□□□□ -0.25
TRIM28-209ENST00000597423 DOLPP1Q86YN1 238 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 WDFY1Q8IWB7 410 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 CNEP1R1Q8N9A8 125 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 OR52N1Q8NH53 320 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 HAVCR2Q8TDQ0 301 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 C11orf40Q8WZ69 217 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 TTYH2Q9BSA4 534 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 WACQ9BTA9 647 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 SIAEQ9HAT2 523 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 NDUFA13Q9P0J0 144 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 POLR1DQ9Y2S0 133 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 CACNA1GO43497 2377 aa13.47□□□□□ -0.25
TRIM28-209ENST00000597423 DNAJC13O75165 2243 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 A0A1W2PQL4 384 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-209ENST00000597423 TFP02787 698 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 MT-ND5P03915 603 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 TFAP2AP05549 437 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 SPARCP09486 303 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 LIMS3P0CW19 117 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 LIMS4P0CW20 117 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 TMIGD3P0DMS9 266 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-209ENST00000597423 GAAP10253 952 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 MSR1P21757 451 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 PCMT1P22061 227 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 SH3BGRP55822 239 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-209ENST00000597423 WNT4P56705 351 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 TGFBR3Q03167 851 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 EGR3Q06889 387 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 MED22Q15528 200 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 PRR30Q53SZ7 412 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-209ENST00000597423 PHYHD1Q5SRE7 291 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 TSPO2Q5TGU0 170 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 UBE2UQ5VVX9 321 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 GPR141Q7Z602 305 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-209ENST00000597423 CDC20BQ86Y33 519 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 OTOSQ8NHW6 89 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 THEM6Q8WUY1 208 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 COG8Q96MW5 612 aa13.46□□□□□ -0.25
TRIM28-209ENST00000597423 TBX5Q99593 518 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms