RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ZNF540Q8NDQ6 660 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 OR1J2Q8NGS2 313 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 SLC7A13Q8TCU3 470 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 NEU4Q8WWR8 484 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 TSPAN32Q96QS1 320 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 MRPL37Q9BZE1 423 aaKnown RBP13.16□□□□□ -0.3
TRIM28-203ENST00000593582 CDH20Q9HBT6 801 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 NDE1Q9NXR1 346 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 TAGLN3Q9UI15 199 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 MAGEL2Q9UJ55 1249 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 UGT2A1Q9Y4X1 527 aa13.16□□□□□ -0.3
TRIM28-203ENST00000593582 SLC22A23A1A5C7 686 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 M0R233 179 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 CDC42EP2O14613 210 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 HSD17B1P14061 328 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 ITGA2P17301 1181 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 APLNRP35414 380 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 NR4A2P43354 598 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 VLDLRP98155 873 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 FHL1Q13642 323 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 SGCAQ16586 387 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 FXNQ16595 210 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 ZBED5Q49AG3 693 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 PODNL1Q6PEZ8 512 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 SLC25A47Q6Q0C1 308 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 ARIH2OSQ8N7S6 290 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 ZNF519Q8TB69 540 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 FAM46AQ96IP4 442 aaKnown RBP13.15□□□□□ -0.3
TRIM28-203ENST00000593582 C7orf34Q96L11 122 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 FOXN4Q96NZ1 517 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 CDRT15Q96T59 188 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 SYT3Q9BQG1 590 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 MS4A5Q9H3V2 200 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 CCNB1IP1Q9NPC3 277 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 KRCC1Q9NPI7 259 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-203ENST00000593582 YAE1D1Q9NRH1 226 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 ARL8BQ9NVJ2 186 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 GRHPRQ9UBQ7 328 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 REV1Q9UBZ9 1251 aa13.15□□□□□ -0.3
TRIM28-203ENST00000593582 IGKV1D-43A0A0B4J1Z2 117 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 VWC2LB2RUY7 222 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 XKRYO14609 159 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 CRLF1O75462 422 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 SNAP29O95721 258 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 CD14P08571 375 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 MMP7P09237 267 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-203ENST00000593582 CCL2P13500 99 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 DAOP14920 347 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 RAD52P43351 418 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 MNAT1P51948 309 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 SELENOVP59797 346 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 ERVK-25P63136 954 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 MXRA7P84157 204 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 GGTLC2Q14390 218 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 MSMPQ1L6U9 139 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 PABPC1L2AQ5JQF8 200 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 FAM27BQ5VT28 67 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 RGS7BPQ6MZT1 257 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-203ENST00000593582 C16orf89Q6UX73 402 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 FAM86B1Q8N7N1 296 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 CLDN22Q8N7P3 220 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 NABP1Q96AH0 204 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 MCUR1Q96AQ8 359 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 PYURFQ96I23 114 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 DUSP13Q9UII6 198 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 FZR1Q9UM11 496 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 V9GYQ6 96 aa13.14□□□□□ -0.31
TRIM28-203ENST00000593582 CR1P17927 2039 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 A8MV72 311 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-203ENST00000593582 DIRAS1O95057 198 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 FAM157BP0CG42 384 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 ZNF32P17041 273 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 MSX2P35548 267 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-203ENST00000593582 SMIM11AP58511 58 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 PCBD1P61457 104 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 SPATS1Q496A3 300 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 IQCCQ4KMZ1 466 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 C6orf52Q5T4I8 152 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 LRP11Q86VZ4 500 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 PAQR4Q8N4S7 273 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-203ENST00000593582 OR52J3Q8NH60 311 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 NSMCE2Q96MF7 247 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 BCL2L14Q9BZR8 327 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 TPK1Q9H3S4 243 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 CD300AQ9UGN4 299 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 ADAM21Q9UKJ8 722 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 ADAM18Q9Y3Q7 739 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 ABCA1O95477 2261 aa13.13□□□□□ -0.31
TRIM28-203ENST00000593582 TRBV4-1A0A0J9YWV2 114 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 A0A1W2PPL8 197 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 A0A1W2PPW3 197 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 ARPC2O15144 300 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 AHCYL1O43865 530 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 NDUFB2O95178 105 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 LCKP06239 509 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 CCNOP22674 350 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 STOMP27105 288 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 APEX1P27695 318 aaKnown RBP13.12□□□□□ -0.31
TRIM28-203ENST00000593582 LAP3P28838 519 aa13.12□□□□□ -0.31
TRIM28-203ENST00000593582 ALDH3B1P43353 468 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms