RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 VHLLQ6RSH7 139 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 SMARCD3Q6STE5 483 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 PRSS57Q6UWY2 283 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 PTCHD4Q6ZW05 846 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 CIARTQ8N365 385 aaPredicted RBP17.4■□□□□ 0.38
SS18-218ENST00000581021 NUP37Q8NFH4 326 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 FBXO17Q96EF6 278 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 KCNS3Q9BQ31 491 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 OR52D1Q9H346 318 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 IER3IP1Q9Y5U9 82 aa17.4■□□□□ 0.38
SS18-218ENST00000581021 PRSS37A4D1T9 235 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 MGRN1O60291 552 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 KRT36O76013 467 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 PPP1R3DO95685 299 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 CTLA4P16410 223 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 SDHAP31040 664 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 THBS4P35443 961 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 CHRNB3Q05901 458 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 FAM98BQ52LJ0 330 aaKnown RBP17.39■□□□□ 0.37
SS18-218ENST00000581021 OTPQ5XKR4 325 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 KRT80Q6KB66 452 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 DPY19L2P2Q6ZN68 376 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 ZNF620Q6ZNG0 422 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 SLC16A14Q7RTX9 510 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 CANT1Q8WVQ1 401 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 FOXN4Q96NZ1 517 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 TRIM15Q9C019 465 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 SIAEQ9HAT2 523 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 KRCC1Q9NPI7 259 aaPredicted RBP17.39■□□□□ 0.37
SS18-218ENST00000581021 TMCC3Q9ULS5 477 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 POMPQ9Y244 141 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 U3KQV3 271 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 ZANQ9Y493 2812 aa17.39■□□□□ 0.37
SS18-218ENST00000581021 ARFGEF3Q5TH69 2177 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 AQP12BA6NM10 295 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 SOCS2O14508 198 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 GSC2O15499 205 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 GPRIN2O60269 458 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 DNAJC8O75937 253 aaPredicted RBP17.38■□□□□ 0.37
SS18-218ENST00000581021 FARS2O95363 451 aaKnown RBP17.38■□□□□ 0.37
SS18-218ENST00000581021 TXNDC12O95881 172 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 SERPINA5P05154 406 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 OR4A8P0C604 315 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 RAP2AP10114 183 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 CCL2P13500 99 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 LAP3P28838 519 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 ERFP50548 548 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 TSPAN31Q12999 210 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 SNTB2Q13425 540 aaKnown RBP17.38■□□□□ 0.37
SS18-218ENST00000581021 SGCAQ16586 387 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 RFX4Q33E94 735 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 OR2T5Q6IEZ7 315 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 UGT2A3Q6UWM9 527 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 AQP12AQ8IXF9 295 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 OR4F15Q8NGB8 312 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 OR2T29Q8NH02 315 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 SAMD8Q96LT4 415 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 LRGUKQ96M69 825 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 RBP7Q96R05 134 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 CHID1Q9BWS9 393 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 SYT4Q9H2B2 425 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 DENND2DQ9H6A0 471 aaPredicted RBP17.38■□□□□ 0.37
SS18-218ENST00000581021 SLC7A8Q9UHI5 535 aa17.38■□□□□ 0.37
SS18-218ENST00000581021 A0A1W2PPL8 197 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 DHRS12A0PJE2 317 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 GASTP01350 101 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 NR2C1P13056 603 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 ZNF32P17041 273 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 NR4A1P22736 598 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 SERPINF1P36955 418 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 CDKN2AP42771 156 aaKnown RBP17.37■□□□□ 0.37
SS18-218ENST00000581021 ENDOGQ14249 297 aaKnown RBP17.37■□□□□ 0.37
SS18-218ENST00000581021 FLOT2Q14254 428 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 SLC36A2Q495M3 483 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 FAM27BQ5VT28 67 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 GPR139Q6DWJ6 353 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 DNM1P46Q6ZS02 220 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 CPEB3Q8NE35 698 aaKnown RBP17.37■□□□□ 0.37
SS18-218ENST00000581021 OR8D4Q8NGM9 314 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 GNPDA2Q8TDQ7 276 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 PLA2G12AQ9BZM1 189 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 EGLN3Q9H6Z9 239 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 ZNF442Q9H7R0 627 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 EMC7Q9NPA0 242 aa17.37■□□□□ 0.37
SS18-218ENST00000581021 VSX1Q9NZR4 365 aaPredicted RBP17.37■□□□□ 0.37
SS18-218ENST00000581021 SAMHD1Q9Y3Z3 626 aaKnown RBP17.37■□□□□ 0.37
SS18-218ENST00000581021 H7C417 338 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 DCTN6O00399 190 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 XKRYO14609 159 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 IGFBP1P08833 259 aaPredicted RBP17.36■□□□□ 0.37
SS18-218ENST00000581021 APEHP13798 732 aaKnown RBP17.36■□□□□ 0.37
SS18-218ENST00000581021 NPR2P20594 1047 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 IFNGR2P38484 337 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 DAG1Q14118 895 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 EFNB3Q15768 340 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 PABPC1L2AQ5JQF8 200 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 DPPA2Q7Z7J5 298 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 TMEM179BQ7Z7N9 219 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 AQP11Q8NBQ7 271 aa17.36■□□□□ 0.37
SS18-218ENST00000581021 SLC30A7Q8NEW0 376 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms