RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SLC2A10O95528 541 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 SNAP29O95721 258 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 MMP7P09237 267 aaPredicted RBP12.81□□□□□ -0.36
SS18-212ENST00000579061 SLC25A16P16260 332 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 CALB2P22676 271 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 RPL4P36578 427 aaKnown RBP12.81□□□□□ -0.36
SS18-212ENST00000579061 GUCA1AP43080 201 aaPredicted RBP12.81□□□□□ -0.36
SS18-212ENST00000579061 OMPP47874 163 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 PLP2Q04941 152 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 FMODQ06828 376 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 MTX3Q5HYI7 312 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 FOXL2NBQ6ZUU3 175 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 IGFN1Q86VF2 1251 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 OR1J2Q8NGS2 313 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 FAM168AQ92567 244 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 MRPL24Q96A35 216 aaKnown RBP12.81□□□□□ -0.36
SS18-212ENST00000579061 NABP1Q96AH0 204 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 POM121Q96HA1 1249 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 FAM46AQ96IP4 442 aaKnown RBP12.81□□□□□ -0.36
SS18-212ENST00000579061 SORCS2Q96PQ0 1159 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 GPX7Q96SL4 187 aaPredicted RBP12.81□□□□□ -0.36
SS18-212ENST00000579061 RAB1BQ9H0U4 201 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 MYOZ1Q9NP98 299 aaPredicted RBP12.81□□□□□ -0.36
SS18-212ENST00000579061 IL1RAPQ9NPH3 570 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 FAM53CQ9NYF3 392 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 ACTR3BQ9P1U1 418 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 AURKCQ9UQB9 309 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 SIGLEC7Q9Y286 467 aa12.81□□□□□ -0.36
SS18-212ENST00000579061 FN1P02751 2386 aaKnown RBP12.8□□□□□ -0.36
SS18-212ENST00000579061 IGHV4-30-2A0A087WSY4 118 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 IGKV1D-43A0A0B4J1Z2 117 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 TRBV4-1A0A0J9YWV2 114 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 IQCMA0A1B0GVH7 501 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 SH3PXD2BA1X283 911 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 DIRAS1O95057 198 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 GADD45GO95257 159 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 FABP3P05413 133 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 HOXB4P17483 251 aaPredicted RBP12.8□□□□□ -0.36
SS18-212ENST00000579061 MSX2P35548 267 aaPredicted RBP12.8□□□□□ -0.36
SS18-212ENST00000579061 ERVK-25P63136 954 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 SEC23BQ15437 767 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 KRTAP21-3Q3LHN1 58 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 FAM27BQ5VT28 67 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 GPR139Q6DWJ6 353 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 Q71RC1 249 aaPredicted RBP12.8□□□□□ -0.36
SS18-212ENST00000579061 FAM122BQ7Z309 247 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 ZNF525Q8N782 197 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 SLC30A7Q8NEW0 376 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 C10orf105Q8TEF2 133 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 NEU4Q8WWR8 484 aaPredicted RBP12.8□□□□□ -0.36
SS18-212ENST00000579061 NSMAFQ92636 917 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 HTRA1Q92743 480 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 VRK1Q99986 396 aaPredicted RBP12.8□□□□□ -0.36
SS18-212ENST00000579061 WACQ9BTA9 647 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 LRMDAQ9H2I8 198 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 MUC13Q9H3R2 512 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 GRHPRQ9UBQ7 328 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 V9GYQ6 96 aa12.8□□□□□ -0.36
SS18-212ENST00000579061 A0A096LNT2 108 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 NDUFS8O00217 210 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 XKRYO14609 159 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 ERCC1P07992 297 aaPredicted RBP12.79□□□□□ -0.36
SS18-212ENST00000579061 CST2P09228 141 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 ZNF26P17031 533 aaPredicted RBP12.79□□□□□ -0.36
SS18-212ENST00000579061 PCSK6P29122 969 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 CDAP32320 146 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 PDLIM4P50479 330 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 SPIBQ01892 262 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 KRTAP1-1Q07627 177 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 LOXL1Q08397 574 aaPredicted RBP12.79□□□□□ -0.36
SS18-212ENST00000579061 SGCAQ16586 387 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 TBC1D28Q2M2D7 210 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 SVOPLQ8N434 492 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 LRRC18Q8N456 261 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 RSRC1Q96IZ7 334 aaKnown RBP12.79□□□□□ -0.36
SS18-212ENST00000579061 Q96M85 177 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 ZNF570Q96NI8 536 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 CDH20Q9HBT6 801 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 CCNB1IP1Q9NPC3 277 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 NRIP3Q9NQ35 241 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 ADAM21Q9UKJ8 722 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 ADAM18Q9Y3Q7 739 aa12.79□□□□□ -0.36
SS18-212ENST00000579061 PRSS37A4D1T9 235 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 UNC119BA6NIH7 251 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 SYNGR3O43761 229 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 GPRIN2O60269 458 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 APEHP13798 732 aaKnown RBP12.78□□□□□ -0.36
SS18-212ENST00000579061 ZNF32P17041 273 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 SDHAP31040 664 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 APLNRP35414 380 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 PCBD1P61457 104 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 HSF2Q03933 536 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 MSMPQ1L6U9 139 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 MESTQ5EB52 335 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 PABPC1L2AQ5JQF8 200 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 DPY19L2P2Q6ZN68 376 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 SYT9Q86SS6 491 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 ZDHHC21Q8IVQ6 265 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 CLDN22Q8N7P3 220 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 OR52J3Q8NH60 311 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms