RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 HINT2Q9BX68 163 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SEC11CQ9BY50 192 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TBL1XR1Q9BZK7 514 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SLC5A7Q9GZV3 580 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR2AG1Q9H205 316 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PORCNQ9H237 461 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ABHD16BQ9H3Z7 469 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 DUSP21Q9H596 190 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 LMAN1LQ9HAT1 526 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ADGRL4Q9HBW9 690 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ACP6Q9NPH0 428 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ACOT13Q9NPJ3 140 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CUTCQ9NTM9 273 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ABCB8Q9NUT2 735 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SPG21Q9NZD8 308 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 LRFN1Q9P244 771 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 COMMD3Q9UBI1 195 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZNF629Q9UEG4 869 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 PRODH2Q9UF12 536 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 HACL1Q9UJ83 578 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZNF222Q9UK12 451 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 FBXL4Q9UKA2 621 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PADI1Q9ULC6 663 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 NEU3Q9UQ49 428 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PPP1R3CQ9UQK1 317 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TPRKBQ9Y3C4 175 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CMAHPQ9Y471 501 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PHLPP1O60346 1717 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 DOT1LQ8TEK3 1739 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 NHSL1Q5SYE7 1610 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 AHDC1Q5TGY3 1603 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 IGSF9BQ9UPX0 1349 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 COL5A2P05997 1499 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 LOXHD1Q8IVV2 1947 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 A0A0A6YYC8 382 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 TRAV39A0A0B4J263 110 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TRAV34A0A0B4J273 112 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TRAV25A0A0B4J276 109 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 A0A0G2JN53 185 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TRBV7-9A0A0J9YWB2 115 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 KLF18A0A0U1RQI7 1052 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 EDDM13A0A1B0GTR0 161 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 FAM240BA0A1B0GVZ2 78 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TMEM269A0A1B0GVZ9 245 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 A0A1W2PPC4 97 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 FAM230AA0A1W2PPH8 454 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SMIM30A4D0T7 59 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR2AG2A6NM03 316 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR52A4PA6NMU1 304 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GJE1A6NN92 205 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 C9J4A7 227 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 F5H6K3 240 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 F6UZH7 168 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 I3L1I5 382 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 K7ERU9 68 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 PEX12O00623 359 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CCL25O15444 150 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 KLRC4O43908 158 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SLC19A2O60779 497 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MOSPD3O75425 235 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SAP30O75446 220 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RDH16O75452 317 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RGS11O94810 467 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TNFSF15O95150 251 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CH25HO95992 272 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MT-ATP6P00846 226 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 VIPP01282 170 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MT-ND1P03886 318 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TCRBP04435 133 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 IGKV2-30P06310 120 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GIPP09681 153 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR5AC1P0C628 307 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TBC1D3HP0C7X1 549 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ZNF35P13682 527 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 HOXB2P14652 356 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 UCHL3P15374 230 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SDC1P18827 310 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GGT1P19440 569 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RAB5AP20339 215 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SLC2A5P22732 501 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 DGKAP23743 735 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GADD45AP24522 165 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 KLRC2P26717 231 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MST1P26927 711 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 PSMB5P28074 263 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 HTR2AP28223 471 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 HOXD9P28356 352 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 SHC1P29353 583 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 IL2RGP31785 369 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 DCTDP32321 178 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CD80P33681 288 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TGFBR1P36897 503 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CXCR3P49682 368 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RGS4P49798 205 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RPL14P50914 215 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 MMP15P51511 669 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ACLYP53396 1101 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CRYBA4P53673 196 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 HCCSP53701 268 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RAG2P55895 527 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms