RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 APEHP13798 732 aaKnown RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 GLB1P16278 677 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 RAB3AP20336 220 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 ZP3P21754 424 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 MPLP40238 635 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 GRK6P43250 576 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 SEC61A1P61619 476 aaKnown RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 LIPNQ5VXI9 398 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 B3GNTL1Q67FW5 361 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 OR5M10Q6IEU7 315 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 LRRTM1Q86UE6 522 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 JAZF1Q86VZ6 243 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 GLB1L2Q8IW92 636 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 ADAD1Q96M93 576 aaKnown RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 TGM7Q96PF1 710 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 CCNL2Q96S94 520 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 REG4Q9BYZ8 158 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 SDHAF2Q9NX18 166 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 TAS2R8Q9NYW2 309 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 FRRS1LQ9P0K9 344 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 MRM2Q9UI43 246 aaKnown RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 ING1Q9UK53 422 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 SESN1Q9Y6P5 492 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 TMEM72A0PK05 275 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 MFSD2BA6NFX1 497 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 FAM171A2A8MVW0 826 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 SIGLEC6O43699 453 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 RDH16O75452 317 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 ZNF432O94892 652 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 HIST1H2ABP04908 130 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 OR8G3PP0DMU2 310 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 S100A11P31949 105 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 RBMS2Q15434 407 aaKnown RBP11.98□□□□□ -0.49
VPS4A-204ENST00000566354 FAM76BQ5HYJ3 339 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 HIST3H2AQ7L7L0 130 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 HIST1H2ACQ93077 130 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 PNPLA2Q96AD5 504 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 CCDC74AQ96AQ1 378 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 C3orf49Q96BT1 292 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 Q96M85 177 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 CCDC3Q9BQI4 270 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 SEMA6CQ9H3T2 930 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 IGHV1OR21-1A0A087WYE8 117 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 ANXA2P2A6NMY6 339 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 BLOC1S5-TXNDC5H3BN57 136 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 H7C417 338 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 PYCARD-AS1I3L0S3 204 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 SUSD5O60279 629 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 RGS11O94810 467 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 IGF2P01344 180 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 ANXA2P07355 339 aaKnown RBP11.98□□□□□ -0.49
VPS4A-204ENST00000566354 CD14P08571 375 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 HOXD4P09016 255 aaPredicted RBP11.98□□□□□ -0.49
VPS4A-204ENST00000566354 ITPKBP27987 946 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 CALCRP30988 508 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 SOX2P48431 317 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 LTBQ06643 244 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 HLXQ14774 488 aaPredicted RBP11.98□□□□□ -0.49
VPS4A-204ENST00000566354 DEFB110Q30KQ9 67 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 RGS7BPQ6MZT1 257 aaPredicted RBP11.98□□□□□ -0.49
VPS4A-204ENST00000566354 NPSR1Q6W5P4 371 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 SLC36A1Q7Z2H8 476 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 RABEPKQ7Z6M1 372 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 TMPRSS12Q86WS5 348 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 ZNF595Q8IYB9 648 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 ZNF440Q8IYI8 595 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 ZNF417Q8TAU3 575 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 STARD5Q9NSY2 213 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 COQ3Q9NZJ6 369 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 MTFP1Q9UDX5 166 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 TINAGQ9UJW2 476 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 HIF3AQ9Y2N7 669 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 SLC6A5Q9Y345 797 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 KCNMB2Q9Y691 235 aa11.98□□□□□ -0.49
VPS4A-204ENST00000566354 A0A087WV48 116 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 LY6G6EA0A0G2JKS1 128 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 F8W036 122 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 FOXS1O43638 330 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CTSBP07858 339 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CSF1P09603 554 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 AQP2P41181 271 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 STARP49675 285 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CFHR1Q03591 330 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 PCGF3Q3KNV8 242 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 GUSBP11Q6P575 273 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 NHLRC1Q6VVB1 395 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 FAM122BQ7Z309 247 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 ZNF227Q86WZ6 799 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 EXD3Q8N9H8 876 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 C19orf47Q8N9M1 422 aaKnown RBP11.97□□□□□ -0.49
VPS4A-204ENST00000566354 OR9A4Q8NGU2 314 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 OR4C3Q8NH37 302 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 SCARB1Q8WTV0 552 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 LIPHQ8WWY8 451 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 DUSP23Q9BVJ7 150 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 OPN4Q9UHM6 478 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 U3KQA8 63 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 IGKV1D-42A0A075B6H8 117 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CPED1A4D0V7 1026 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 ELOA3DA6NLF2 546 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms