RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SH3BGRP55822 239 aaPredicted RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 BST2Q10589 180 aaKnown RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 TRDNQ13061 729 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 PPIL2Q13356 520 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 CTRB2Q6GPI1 263 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 C6orf89Q6UWU4 347 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 C19orf35Q6ZS72 473 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 FAM228AQ86W67 206 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 OTUD6BQ8N6M0 293 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 OR2L3Q8NG85 312 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 SLC2A14Q8TDB8 520 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 RNF138Q8WVD3 245 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 PIBF1Q8WXW3 757 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 FGF14Q92915 247 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 OR8B4Q96RC9 309 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 SORT1Q99523 831 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 NRTNQ99748 197 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 MRPL47Q9HD33 250 aaKnown RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 ADAP2Q9NPF8 381 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 SLC2A8Q9NY64 477 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 CALYQ9NYX4 217 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 CLCF1Q9UBD9 225 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 DOCK2Q92608 1830 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 ZNF609O15014 1411 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 KDM6AO15550 1401 aaPredicted RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 SHANK3Q9BYB0 1731 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 MEGF6O75095 1541 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 NUP98P52948 1817 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 XIRP1Q702N8 1843 aaKnown RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 A0A0G2JN53 185 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 FAM47DPA6NHR8 397 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 PANO1I0J062 215 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 KRTAP5-8O75690 187 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 ATRNO75882 1429 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 TMEM50AO95807 157 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 FGF1P05230 155 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 GLI3P10071 1580 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 HPGDP15428 266 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 KITLGP21583 273 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 ATP5C1P36542 298 aaKnown RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 VHLP40337 213 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 YAP1P46937 504 aaKnown RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 ACVR1Q04771 509 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 CKAP4Q07065 602 aaKnown RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 UNC119Q13432 240 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 GPNMBQ14956 572 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 CCDC88AQ3V6T2 1871 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 TRIM40Q6P9F5 258 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 CDR2LQ86X02 465 aaPredicted RBP3.17□□□□□ -1.9
LINC00560-201ENST00000564593 PDCL2Q8N4E4 241 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 RNF175Q8N4F7 328 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 FAM71E2Q8N5Q1 922 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 STMN2Q93045 179 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 HSFY1Q96LI6 401 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 SRMSQ9H3Y6 488 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 ZFP14Q9HCL3 533 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 DUOX1Q9NRD9 1551 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 CCL28Q9NRJ3 127 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 ZNF225Q9UK10 706 aa3.17□□□□□ -1.9
LINC00560-201ENST00000564593 MAST2Q6P0Q8 1798 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 ECM29Q5VYK3 1845 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 TIAM2Q8IVF5 1701 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 TNS2Q63HR2 1409 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 UQCRHLA0A096LP55 91 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 WI2-2373I1.2A0A1W2PRP0 233 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 CCDC169A6NNP5 214 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 AP3B1O00203 1094 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 CIB2O75838 187 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 C1orf105O95561 183 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 IGHV2-5P01817 119 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 UQCRHP07919 91 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 ZNF17P17021 662 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 TCN1P20061 433 aaPredicted RBP3.16□□□□□ -1.9
LINC00560-201ENST00000564593 IFNA8P32881 189 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 PLP1P60201 277 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 KCNJ2P63252 427 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 KIAA0087Q14695 138 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 ZYG11AQ6WRX3 759 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 ACP7Q6ZNF0 438 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 COPS6Q7L5N1 327 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 OR2G2Q8NGZ5 317 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 KCNG3Q8TAE7 436 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 RNF139Q8WU17 664 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 CNDP1Q96KN2 507 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 TMEM59Q9BXS4 323 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 DEFB127Q9H1M4 99 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 CLSTN2Q9H4D0 955 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 EML4Q9HC35 981 aaKnown RBP3.16□□□□□ -1.9
LINC00560-201ENST00000564593 SPATA7Q9P0W8 599 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 PISDQ9UG56 409 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 LRP5O75197 1615 aa3.16□□□□□ -1.9
LINC00560-201ENST00000564593 ZNF831Q5JPB2 1677 aa3.15□□□□□ -1.9
LINC00560-201ENST00000564593 CDHR2Q9BYE9 1310 aa3.15□□□□□ -1.9
LINC00560-201ENST00000564593 KCPQ6ZWJ8 1503 aa3.15□□□□□ -1.9
LINC00560-201ENST00000564593 PHLPP1O60346 1717 aa3.15□□□□□ -1.9
LINC00560-201ENST00000564593 KIAA1551Q9HCM1 1747 aa3.15□□□□□ -1.9
LINC00560-201ENST00000564593 TMEM94Q12767 1356 aa3.15□□□□□ -1.9
LINC00560-201ENST00000564593 AKAP11Q9UKA4 1901 aa3.15□□□□□ -1.9
LINC00560-201ENST00000564593 STRCP1A6NGW2 1772 aa3.15□□□□□ -1.9
LINC00560-201ENST00000564593 LAMB1P07942 1786 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms