RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 BBIP1A8MTZ0 92 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 FAM157AC9JC47 383 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 MMP7P09237 267 aaPredicted RBP16.22■□□□□ 0.19
VPS35-202ENST00000561713 CCNOP22674 350 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 ACTG1P63261 375 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 HSF2Q03933 536 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 HNRNPA0Q13151 305 aaKnown RBP16.22■□□□□ 0.19
VPS35-202ENST00000561713 TBC1D28Q2M2D7 210 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 COQ5Q5HYK3 327 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 PABPC1L2AQ5JQF8 200 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 SPATA46Q5T0L3 261 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 ARMC4Q5T2S8 1044 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 ERICH5Q6P6B1 374 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 VTCN1Q7Z7D3 282 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 OR2T12Q8NG77 320 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 HIF1ANQ9NWT6 349 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 TREM2Q9NZC2 230 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 MED31Q9Y3C7 131 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 CAPN7Q9Y6W3 813 aa16.22■□□□□ 0.19
VPS35-202ENST00000561713 J3KTA2 159 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 PPIHO43447 177 aaKnown RBP16.21■□□□□ 0.19
VPS35-202ENST00000561713 RP2O75695 350 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 VIMP08670 466 aaKnown RBP16.21■□□□□ 0.19
VPS35-202ENST00000561713 IFI30P13284 250 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 ZNF32P17041 273 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 ACHEP22303 614 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 COMPP49747 757 aaPredicted RBP16.21■□□□□ 0.19
VPS35-202ENST00000561713 KLF3P57682 345 aaPredicted RBP16.21■□□□□ 0.19
VPS35-202ENST00000561713 ERVK-25P63136 954 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 CCL8P80075 99 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 LAPTM4AQ15012 233 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 MAPRE2Q15555 327 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 TMEM255AQ5JRV8 349 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 C10orf128Q5T292 105 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 AVPI1Q5T686 147 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 C3orf56Q8N813 242 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 CPEB3Q8NE35 698 aaKnown RBP16.21■□□□□ 0.19
VPS35-202ENST00000561713 AKR7LQ8NHP1 331 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 RDH5Q92781 318 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 NABP1Q96AH0 204 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 TMEM186Q96B77 213 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 NMD3Q96D46 503 aaKnown RBP16.21■□□□□ 0.19
VPS35-202ENST00000561713 PRRC1Q96M27 445 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 ZNF346Q9UL40 294 aaKnown RBP16.21■□□□□ 0.19
VPS35-202ENST00000561713 A4GNTQ9UNA3 340 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 SNX13Q9Y5W8 968 aa16.21■□□□□ 0.19
VPS35-202ENST00000561713 TRAV27A0A087WT01 109 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 IQCMA0A1B0GVH7 501 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 KCNAB3O43448 404 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 ENTPD5O75356 428 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 KDELR2P33947 212 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 GUCY1A3Q02108 690 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 SGCAQ16586 387 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 ALG10Q5BKT4 473 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 THSD4Q6ZMP0 1018 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 ZNF771Q7L3S4 317 aaPredicted RBP16.2■□□□□ 0.18
VPS35-202ENST00000561713 HDDC2Q7Z4H3 204 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 ZNF101Q8IZC7 436 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 SYNPRQ8TBG9 265 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 SNX33Q8WV41 574 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 CCNB1IP1Q9NPC3 277 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 HINT3Q9NQE9 182 aaKnown RBP16.2■□□□□ 0.18
VPS35-202ENST00000561713 CMTM6Q9NX76 183 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 CACNG2Q9Y698 323 aa16.2■□□□□ 0.18
VPS35-202ENST00000561713 IGLV3-9A0A075B6K5 115 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 C17orf100A8MU93 164 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 H7C1C5 153 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 MGRN1O60291 552 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 SNAP29O95721 258 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 TSPAN19P0C672 248 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 ZNF250P15622 560 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 MAKP20794 623 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 APLNRP35414 380 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 WNT5AP41221 380 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 ZNF133P52736 654 aaPredicted RBP16.19■□□□□ 0.18
VPS35-202ENST00000561713 LCN6P62502 163 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 PLP2Q04941 152 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 RFPL4BQ6ZWI9 263 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 NRMQ8IXM6 262 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 OR1J1Q8NGS3 322 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 OR13C2Q8NGS9 318 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 GCDHQ92947 438 aaPredicted RBP16.19■□□□□ 0.18
VPS35-202ENST00000561713 POLR2J2Q9GZM3 115 aaKnown RBP16.19■□□□□ 0.18
VPS35-202ENST00000561713 RACGAP1Q9H0H5 632 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 POLR2J3Q9H1A7 115 aaKnown RBP16.19■□□□□ 0.18
VPS35-202ENST00000561713 C1orf198Q9H425 327 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 MAN2C1Q9NTJ4 1040 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 HIF3AQ9Y2N7 669 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 TRRAPQ9Y4A5 3859 aa16.19■□□□□ 0.18
VPS35-202ENST00000561713 IFNA14P01570 189 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 MSMBP08118 114 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 MPV17P39210 176 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 UCP2P55851 309 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 MRPS34P82930 218 aaKnown RBP16.18■□□□□ 0.18
VPS35-202ENST00000561713 MVKQ03426 396 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 TSTQ16762 297 aaKnown RBP16.18■□□□□ 0.18
VPS35-202ENST00000561713 TMEM154Q6P9G4 183 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 SHQ1Q6PI26 577 aaKnown RBP16.18■□□□□ 0.18
VPS35-202ENST00000561713 DPPA2Q7Z7J5 298 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 PCYOX1LQ8NBM8 494 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms