RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 MBOAT4Q96T53 435 aa19.02■□□□□ 0.64
SNX1-210ENST00000560260 USB1Q9BQ65 265 aaKnown RBP19.02■□□□□ 0.64
SNX1-210ENST00000560260 HCAR1Q9BXC0 346 aa19.02■□□□□ 0.64
SNX1-210ENST00000560260 RERGLQ9H628 205 aa19.02■□□□□ 0.64
SNX1-210ENST00000560260 DCLRE1BQ9H816 532 aa19.02■□□□□ 0.64
SNX1-210ENST00000560260 B9D1Q9UPM9 204 aa19.02■□□□□ 0.64
SNX1-210ENST00000560260 COA3Q9Y2R0 106 aaPredicted RBP19.02■□□□□ 0.64
SNX1-210ENST00000560260 AMDHD2Q9Y303 409 aa19.02■□□□□ 0.64
SNX1-210ENST00000560260 A0A1W2PPL8 197 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 DEFB108AA8MXU0 73 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 E9PQ18 207 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 CASQ2O14958 399 aaPredicted RBP19.01■□□□□ 0.63
SNX1-210ENST00000560260 KHDRBS3O75525 346 aaKnown RBP19.01■□□□□ 0.63
SNX1-210ENST00000560260 HLA-HP01893 362 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 LOXP28300 417 aaPredicted RBP19.01■□□□□ 0.63
SNX1-210ENST00000560260 NPRL3Q12980 569 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 LRRC36Q1X8D7 754 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 SLX4IPQ5VYV7 408 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 C12orf73Q69YU5 71 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 SH3GL3Q99963 347 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 NMNAT2Q9BZQ4 307 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 MED20Q9H944 212 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 RNPEPL1Q9HAU8 725 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 FBN2P35556 2912 aa19.01■□□□□ 0.63
SNX1-210ENST00000560260 ASH1LQ9NR48 2969 aaKnown RBP19.01■□□□□ 0.63
SNX1-210ENST00000560260 FAM183AA6NL82 134 aa19■□□□□ 0.63
SNX1-210ENST00000560260 RIIAD1A6NNX1 92 aa19■□□□□ 0.63
SNX1-210ENST00000560260 FAM171A2A8MVW0 826 aa19■□□□□ 0.63
SNX1-210ENST00000560260 H0YHG0 523 aa19■□□□□ 0.63
SNX1-210ENST00000560260 MPZL1O95297 269 aa19■□□□□ 0.63
SNX1-210ENST00000560260 PATE4P0C8F1 98 aa19■□□□□ 0.63
SNX1-210ENST00000560260 GAAP10253 952 aa19■□□□□ 0.63
SNX1-210ENST00000560260 PYCR1P32322 319 aa19■□□□□ 0.63
SNX1-210ENST00000560260 ZIK1Q3SY52 487 aaPredicted RBP19■□□□□ 0.63
SNX1-210ENST00000560260 UGT2A3Q6UWM9 527 aa19■□□□□ 0.63
SNX1-210ENST00000560260 ZBTB46Q86UZ6 589 aa19■□□□□ 0.63
SNX1-210ENST00000560260 C1QTNF6Q9BXI9 259 aa19■□□□□ 0.63
SNX1-210ENST00000560260 RACGAP1Q9H0H5 632 aa19■□□□□ 0.63
SNX1-210ENST00000560260 SRA1Q9HD15 236 aaKnown RBP19■□□□□ 0.63
SNX1-210ENST00000560260 POLE4Q9NR33 117 aa19■□□□□ 0.63
SNX1-210ENST00000560260 B3GNT2Q9NY97 397 aa19■□□□□ 0.63
SNX1-210ENST00000560260 FKBP7Q9Y680 259 aa19■□□□□ 0.63
SNX1-210ENST00000560260 HRNRQ86YZ3 2850 aaPredicted RBP19■□□□□ 0.63
SNX1-210ENST00000560260 CELSR2Q9HCU4 2923 aa19■□□□□ 0.63
SNX1-210ENST00000560260 DLGAP1O14490 977 aa19■□□□□ 0.63
SNX1-210ENST00000560260 IFNGP01579 166 aa19■□□□□ 0.63
SNX1-210ENST00000560260 HMGN1P05114 100 aa19■□□□□ 0.63
SNX1-210ENST00000560260 GYPBP06028 91 aa19■□□□□ 0.63
SNX1-210ENST00000560260 OR8G3PP0DMU2 310 aa19■□□□□ 0.63
SNX1-210ENST00000560260 CLUP10909 449 aa19■□□□□ 0.63
SNX1-210ENST00000560260 HOXB1P14653 301 aaPredicted RBP19■□□□□ 0.63
SNX1-210ENST00000560260 ZNF3P17036 446 aa19■□□□□ 0.63
SNX1-210ENST00000560260 CRABP1P29762 137 aa19■□□□□ 0.63
SNX1-210ENST00000560260 HOXC12P31275 282 aa19■□□□□ 0.63
SNX1-210ENST00000560260 ZNF83P51522 516 aa19■□□□□ 0.63
SNX1-210ENST00000560260 UBE2NP61088 152 aaKnown RBP19■□□□□ 0.63
SNX1-210ENST00000560260 DAZAP2Q15038 168 aaPredicted RBP19■□□□□ 0.63
SNX1-210ENST00000560260 SGCAQ16586 387 aa19■□□□□ 0.63
SNX1-210ENST00000560260 NRN1LQ496H8 165 aa19■□□□□ 0.63
SNX1-210ENST00000560260 OGFRL1Q5TC84 451 aaPredicted RBP19■□□□□ 0.63
SNX1-210ENST00000560260 MYPOPQ86VE0 399 aaPredicted RBP19■□□□□ 0.63
SNX1-210ENST00000560260 MARVELD3Q96A59 401 aa19■□□□□ 0.63
SNX1-210ENST00000560260 MUCL1Q96DR8 90 aa19■□□□□ 0.63
SNX1-210ENST00000560260 HS3ST6Q96QI5 342 aa19■□□□□ 0.63
SNX1-210ENST00000560260 TOR3AQ9H497 397 aa19■□□□□ 0.63
SNX1-210ENST00000560260 SEC61A2Q9H9S3 476 aa19■□□□□ 0.63
SNX1-210ENST00000560260 SIAEQ9HAT2 523 aa19■□□□□ 0.63
SNX1-210ENST00000560260 SLC24A3Q9HC58 644 aa19■□□□□ 0.63
SNX1-210ENST00000560260 EMC7Q9NPA0 242 aa19■□□□□ 0.63
SNX1-210ENST00000560260 OBP2BQ9NPH6 170 aa19■□□□□ 0.63
SNX1-210ENST00000560260 HINT3Q9NQE9 182 aaKnown RBP19■□□□□ 0.63
SNX1-210ENST00000560260 ZNF226Q9NYT6 803 aa19■□□□□ 0.63
SNX1-210ENST00000560260 TVP23BQ9NYZ1 205 aa19■□□□□ 0.63
SNX1-210ENST00000560260 ENOPH1Q9UHY7 261 aa19■□□□□ 0.63
SNX1-210ENST00000560260 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.99■□□□□ 0.63
SNX1-210ENST00000560260 A6NNC1 897 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 MGRN1O60291 552 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 SNAP29O95721 258 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 LAP3P28838 519 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 SLC25A1P53007 311 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 RAD23AP54725 363 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 ENDOGQ14249 297 aaKnown RBP18.99■□□□□ 0.63
SNX1-210ENST00000560260 LYPD4Q6UWN0 246 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 MDP1Q86V88 176 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 LRRC18Q8N456 261 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 OR51L1Q8NGJ5 315 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 ZNF75AQ96N20 296 aa18.99■□□□□ 0.63
SNX1-210ENST00000560260 RRP15Q9Y3B9 282 aaKnown RBP18.99■□□□□ 0.63
SNX1-210ENST00000560260 FAM221AA4D161 298 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 DPRXA6NFQ7 191 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 CASKO14936 926 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 PRKYO43930 277 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 HRGP04196 525 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 CELA3BP08861 270 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 PRF1P14222 555 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 SPI1P17947 270 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 MSR1P21757 451 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 CAPZA2P47755 286 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 SLC34A1Q06495 639 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 PIGFQ07326 219 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms