RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 NDUFAB1O14561 156 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 GMNNO75496 209 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 TRMUO75648 421 aaKnown RBP10.79□□□□□ -0.68
SNX1-209ENST00000559961 LYPD3O95274 346 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 HPXP02790 462 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 THY1P04216 161 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 IFNW1P05000 195 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 IFI30P13284 250 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 CCL2P13500 99 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 COL8A2P25067 703 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 STOMP27105 288 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 KDELR2P33947 212 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 LIPAP38571 399 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 SELENOWP63302 87 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 MRPS34P82930 218 aaKnown RBP10.79□□□□□ -0.68
SNX1-209ENST00000559961 TOP3AQ13472 1001 aaPredicted RBP10.79□□□□□ -0.68
SNX1-209ENST00000559961 TRIP10Q15642 601 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 HFEQ30201 348 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 ANKDD1AQ495B1 522 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 RINLQ6ZS11 566 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 FKBP9P1Q75LS8 142 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 PEG10Q86TG7 708 aaKnown RBP10.79□□□□□ -0.68
SNX1-209ENST00000559961 CALHM3Q86XJ0 350 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 PFN4Q8NHR9 129 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 NSMAFQ92636 917 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 RAB1CQ92928 201 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 RAB39BQ96DA2 213 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 BPIFA2Q96DR5 249 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 ZNF75AQ96N20 296 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 PRSS27Q9BQR3 290 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 ALG12Q9BV10 488 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 C19orf24Q9BVV8 132 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 EGLN1Q9GZT9 426 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 TXNIPQ9H3M7 391 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 ELOVL3Q9HB03 270 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 MEPEQ9NQ76 525 aaPredicted RBP10.79□□□□□ -0.68
SNX1-209ENST00000559961 CYSLTR2Q9NS75 346 aa10.79□□□□□ -0.68
SNX1-209ENST00000559961 ZNF275Q9NSD4 429 aaPredicted RBP10.79□□□□□ -0.68
SNX1-209ENST00000559961 C5orf49A4QMS7 147 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 NPIPB13A6NJU9 1138 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 NPIPB4C9JG80 1138 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 XKRYO14609 159 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 SLC22A2O15244 555 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 CDC14BO60729 498 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 SHOX2O60902 331 aaPredicted RBP10.78□□□□□ -0.68
SNX1-209ENST00000559961 ZNF250P15622 560 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 TNFRSF1BP20333 461 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 RPL4P36578 427 aaKnown RBP10.78□□□□□ -0.68
SNX1-209ENST00000559961 GZMMP51124 257 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 CTXN1P60606 82 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 RPL27P61353 136 aaKnown RBP10.78□□□□□ -0.68
SNX1-209ENST00000559961 CCL8P80075 99 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 SLC3A1Q07837 685 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 SF3A3Q12874 501 aaKnown RBP eCLIP10.78□□□□□ -0.685e-6■■■■■ 39.5
SNX1-209ENST00000559961 LAPTM4AQ15012 233 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 TRAM2Q15035 370 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 HIST3H3Q16695 136 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 ZMAT1Q5H9K5 638 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 PABPC1L2AQ5JQF8 200 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 ELFN2Q5R3F8 820 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 C10orf128Q5T292 105 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 ZER1Q7Z7L7 766 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 OAFQ86UD1 273 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 ZNF584Q8IVC4 421 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 MICU2Q8IYU8 434 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 FGFBP3Q8TAT2 258 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 LIPHQ8WWY8 451 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 TMEM186Q96B77 213 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 PRRC1Q96M27 445 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 ZNF583Q96ND8 569 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 MRPL13Q9BYD1 178 aaKnown RBP10.78□□□□□ -0.68
SNX1-209ENST00000559961 SAR1AQ9NR31 198 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 FGFR1OP2Q9NVK5 253 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 HIF1ANQ9NWT6 349 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 NKIRAS2Q9NYR9 191 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 TREM2Q9NZC2 230 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 TIMM10BQ9Y5J6 103 aa10.78□□□□□ -0.68
SNX1-209ENST00000559961 TRAV20A0A0B4J274 112 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 IGHV1-69-2A0A0G2JMI3 117 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 A0A1W2PPL8 197 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 C12orf71A8MTZ7 269 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 EFCAB9A8MZ26 197 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 CLDN25C9JDP6 229 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 CCDC22O60826 627 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 SLC2A10O95528 541 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 ZNF682O95780 498 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 CLPTM1O96005 669 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 MSMBP08118 114 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 IL2RGP31785 369 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 SLC9A3P48764 834 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 ZNF81P51508 661 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 TSTQ16762 297 aaKnown RBP10.77□□□□□ -0.69
SNX1-209ENST00000559961 KRTAP24-1Q3LI83 254 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 ACSM5Q6NUN0 579 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 FAHD2BQ6P2I3 314 aaPredicted RBP10.77□□□□□ -0.69
SNX1-209ENST00000559961 ZNF730Q6ZMV8 503 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 WDFY1Q8IWB7 410 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 RNF113BQ8IZP6 322 aaKnown RBP10.77□□□□□ -0.69
SNX1-209ENST00000559961 MOSPD2Q8NHP6 518 aa10.77□□□□□ -0.69
SNX1-209ENST00000559961 CLDND2Q8NHS1 167 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms