RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 HIST1H2ABP04908 130 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 F13BP05160 661 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 GAAP10253 952 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 SAGP10523 405 aaPredicted RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 UMPSP11172 480 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 FUT1P19526 365 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 TNFRSF1BP20333 461 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 LSP1P33241 339 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 PCGF2P35227 344 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 LMO4P61968 165 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 GNGT1P63211 74 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 HIST3H3Q16695 136 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 VMACQ2NL98 169 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 REP15Q6BDI9 236 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 RGS7BPQ6MZT1 257 aaPredicted RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 TMEM53Q6P2H8 277 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 CCDC80Q76M96 950 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 HIST3H2AQ7L7L0 130 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 SLC16A14Q7RTX9 510 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 PATL1Q86TB9 770 aaKnown RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 GLCCI1Q86VQ1 547 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 NKAIN4Q8IVV8 208 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 MRPL41Q8IXM3 137 aaKnown RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 SLC26A7Q8TE54 656 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 DYDC1Q8WWB3 177 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 STON2Q8WXE9 905 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 GTF3AQ92664 365 aaKnown RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 HIST1H2ACQ93077 130 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 TMEM186Q96B77 213 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 MPP4Q96JB8 637 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 FANCD2OSQ96PS1 177 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 MRPL13Q9BYD1 178 aaKnown RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 SLC19A3Q9BZV2 496 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 PCDHAC1Q9H158 963 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 METTL17Q9H7H0 456 aaPredicted RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 CDH20Q9HBT6 801 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 BATF3Q9NR55 127 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 INTS9Q9NV88 658 aaKnown RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 HIF1ANQ9NWT6 349 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 ZNF346Q9UL40 294 aaKnown RBP7.23□□□□□ -1.25
USP28-215ENST00000545608 CAPN7Q9Y6W3 813 aa7.23□□□□□ -1.25
USP28-215ENST00000545608 SLC22A23A1A5C7 686 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 C17orf100A8MU93 164 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 FBP2O00757 339 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 ENTPD5O75356 428 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 TRMUO75648 421 aaKnown RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 OR7A10O76100 309 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 FARS2O95363 451 aaKnown RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 IGHG1P01857 330 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 TFP02787 698 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 LCKP06239 509 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 MSMBP08118 114 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 MMP7P09237 267 aaPredicted RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 ZNF250P15622 560 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 ACADSP16219 412 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 PCMT1P22061 227 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 AQP2P41181 271 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 UGT2B15P54855 530 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 UCP2P55851 309 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 CLRN1P58418 232 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 CCL8P80075 99 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 MRPS11P82912 194 aaKnown RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 RPL18Q07020 188 aaKnown RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 SNCBQ16143 134 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 NKPD1Q17RQ9 610 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 SLC36A2Q495M3 483 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 AVPI1Q5T686 147 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 INTS11Q5TA45 600 aaKnown RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 NANOGP8Q6NSW7 305 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 DEF8Q6ZN54 512 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 CCDC121Q6ZUS5 278 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 NANOGNBQ7Z5D8 188 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 DPPA2Q7Z7J5 298 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 SLC30A8Q8IWU4 369 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 LRRC18Q8N456 261 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 SYT14Q8NB59 555 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 CPEB3Q8NE35 698 aaKnown RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 NOXO1Q8NFA2 376 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 MOSPD2Q8NHP6 518 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 PFN4Q8NHR9 129 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 ZNF519Q8TB69 540 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 SYNPRQ8TBG9 265 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 TSPEARQ8WU66 669 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 TMEM255BQ8WV15 326 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 ASB10Q8WXI3 467 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 C11orf40Q8WZ69 217 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 RSRC1Q96IZ7 334 aaKnown RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 LRRC37BQ96QE4 947 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 SEPHS2Q99611 448 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 ZNF416Q9BWM5 594 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 NANOGQ9H9S0 305 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 HINT3Q9NQE9 182 aaKnown RBP7.22□□□□□ -1.25
USP28-215ENST00000545608 C20orf141Q9NUB4 165 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 SH3GLB1Q9Y371 365 aa7.22□□□□□ -1.25
USP28-215ENST00000545608 IGKV1D-43A0A0B4J1Z2 117 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 IQCMA0A1B0GVH7 501 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 A0A1W2PRG6 482 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 RGS13O14921 159 aa7.21□□□□□ -1.26
USP28-215ENST00000545608 EDF1O60869 148 aaKnown RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms