RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 LINC00471Q8N535 108 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 CLDN22Q8N7P3 220 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 OR4C15Q8NGM1 316 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 FGFBP3Q8TAT2 258 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 FANK1Q8TC84 345 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 MS4A3Q96HJ5 214 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 Q96M85 177 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 ZNF570Q96NI8 536 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 RBP7Q96R05 134 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 SH3GL3Q99963 347 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 TRIM15Q9C019 465 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 TMCC3Q9ULS5 477 aa11.35□□□□□ -0.59
LTBR-208ENST00000541005 SETD2Q9BYW2 2564 aaPredicted RBP11.34□□□□□ -0.59
LTBR-208ENST00000541005 ZANQ9Y493 2812 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 SLC22A23A1A5C7 686 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 PRSS37A4D1T9 235 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 AQP12BA6NM10 295 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 OR10H3O60404 316 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 STAMBPO95630 424 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 IGHV4-39P01824 125 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 NR4A1P22736 598 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 SERPINF1P36955 418 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 CHRNB3Q05901 458 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 BNIP1Q12981 228 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 KRR1Q13601 381 aaKnown RBP11.34□□□□□ -0.59
LTBR-208ENST00000541005 GK3PQ14409 553 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 ADIPOQQ15848 244 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 FAM98BQ52LJ0 330 aaKnown RBP11.34□□□□□ -0.59
LTBR-208ENST00000541005 FAM27BQ5VT28 67 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 OR2T5Q6IEZ7 315 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 ZNF770Q6IQ21 691 aaPredicted RBP11.34□□□□□ -0.59
LTBR-208ENST00000541005 TMEM53Q6P2H8 277 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 PGBD2Q6P3X8 592 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 DNM1P46Q6ZS02 220 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 SLC16A14Q7RTX9 510 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 AQP12AQ8IXF9 295 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 OR2T29Q8NH02 315 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 HTRA1Q92743 480 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 LRGUKQ96M69 825 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 Q96MF0 132 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 BTBD10Q9BSF8 475 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 CACNG6Q9BXT2 260 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 C1orf198Q9H425 327 aa11.34□□□□□ -0.59
LTBR-208ENST00000541005 BARX1Q9HBU1 254 aaPredicted RBP11.34□□□□□ -0.59
LTBR-208ENST00000541005 VPS13CQ709C8 3753 aa11.33□□□□□ -0.59
LTBR-208ENST00000541005 TEX13CA0A0J9YWL9 993 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 B9A039 149 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 TNFRSF11BO00300 401 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 XKRYO14609 159 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 IMPA2O14732 288 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 ARPC3O15145 178 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 SNAP29O95721 258 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 PATE4P0C8F1 98 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 RAP2AP10114 183 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 BMP4P12644 408 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 CDAP32320 146 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 TSPAN31Q12999 210 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 SNTB2Q13425 540 aaKnown RBP11.33□□□□□ -0.6
LTBR-208ENST00000541005 RAB39AQ14964 217 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 RFX4Q33E94 735 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 ZNF620Q6ZNG0 422 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 ADGRG5Q8IZF4 528 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 NSMAFQ92636 917 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 RASD2Q96D21 266 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 COX4I2Q96KJ9 171 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 SNX18Q96RF0 628 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 BDH2Q9BUT1 245 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 OR52D1Q9H346 318 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 PLK3Q9H4B4 646 aa11.33□□□□□ -0.6
LTBR-208ENST00000541005 VSX1Q9NZR4 365 aaPredicted RBP11.33□□□□□ -0.6
LTBR-208ENST00000541005 FBXO9Q9UK97 447 aaPredicted RBP11.33□□□□□ -0.6
LTBR-208ENST00000541005 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.33□□□□□ -0.61e-6■■■■□ 19.9
LTBR-208ENST00000541005 H7C1C5 153 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 DNAJC8O75937 253 aaPredicted RBP11.32□□□□□ -0.6
LTBR-208ENST00000541005 PTHP01270 115 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 CST2P09228 141 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 OR4A8P0C604 315 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 CTLA4P16410 223 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 MSR1P21757 451 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 SLC6A6P31641 620 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 THBS4P35443 961 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 GLRXP35754 106 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 RPS6KA3P51812 740 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 SNRPD2P62316 118 aaKnown RBP11.32□□□□□ -0.6
LTBR-208ENST00000541005 LCN6P62502 163 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 DAG1Q14118 895 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 RPL13AP3Q6NVV1 102 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 LRRC18Q8N456 261 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 SLC30A7Q8NEW0 376 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 OR9Q2Q8NGE9 314 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 GNPDA2Q8TDQ7 276 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 C18orf12Q96KH6 178 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 WACQ9BTA9 647 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 REEP1Q9H902 201 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 POLE4Q9NR33 117 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 VNN3Q9NY84 501 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 SLC7A8Q9UHI5 535 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 GDF2Q9UK05 429 aaPredicted RBP11.32□□□□□ -0.6
LTBR-208ENST00000541005 CDH10Q9Y6N8 788 aa11.32□□□□□ -0.6
LTBR-208ENST00000541005 DHRS12A0PJE2 317 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms