RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 PTPRJQ12913 1337 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 IGSF9BQ9UPX0 1349 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 A2ML1A8K2U0 1454 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 NUP153P49790 1475 aaKnown RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 CICQ96RK0 1608 aaPredicted RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 KIDINS220Q9ULH0 1771 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 DLEC1Q9Y238 1755 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 A0A087WUJ7 227 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 C20orf202A1L168 122 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 LRIT2A6NDA9 550 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SERPINE3A8MV23 424 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 MYO1GB0I1T2 1018 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 MCRIP1C9JLW8 97 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 ANHXE9PGG2 379 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 RPL36A-HNRNPH2H7BZ11 118 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 H7C423 109 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 TLR4O00206 839 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 UPK1AO00322 258 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 PDXKO00764 312 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CYB561D2O14569 222 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 BCKDKO14874 412 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CHADO15335 359 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 FLRT2O43155 660 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 TGOLN2O43493 480 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SLC37A4O43826 429 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 HBP1O60381 514 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 PRAF2O60831 178 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 DNAJB6O75190 326 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 RHBDL1O75783 438 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 ATP6AP2O75787 350 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 AP2A2O94973 939 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 AKR7A3O95154 331 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CLDN9O95484 217 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 METTL18O95568 372 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 FADS2O95864 444 aaKnown RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 CYB5R3P00387 301 aaPredicted RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 SERPINA1P01009 418 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 EGFP01133 1207 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 IGF2P01344 180 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 MT-ND1P03886 318 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 LIPFP07098 398 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 ADRB2P07550 413 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SRPRAP08240 638 aaKnown RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 HMBSP08397 361 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GIPP09681 153 aaPredicted RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 UBBP0CG47 229 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 UBCP0CG48 685 aaKnown RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 SLC2A2P11168 524 aaPredicted RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 SCGB1A1P11684 91 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GATA1P15976 413 aaPredicted RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 NQO2P16083 231 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GNB3P16520 340 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 PGAM1P18669 254 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 TBPP20226 339 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 PTNP21246 168 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CNR1P21554 472 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GLRA1P23415 457 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CD82P27701 267 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SDC4P31431 198 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 MC5RP33032 325 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SDC2P34741 201 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GGT2P36268 569 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 IFNGR2P38484 337 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 PBX3P40426 434 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 NAA10P41227 235 aaPredicted RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 MATKP42679 507 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GLP1RP43220 463 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GRK6P43250 576 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 MAGEA3P43357 314 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GCLMP48507 274 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CAMLGP49069 296 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 INPP1P49441 399 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 EVX1P49640 407 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CEBPDP49716 269 aaPredicted RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 PPT1P50897 306 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 MVDP53602 400 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 EMP2P54851 167 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 VSX2P58304 361 aaPredicted RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 OR2B8PP59922 312 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CDC42P60953 191 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SELENOTP62341 195 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 RPS27AP62979 156 aaKnown RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 UBA52P62987 128 aaKnown RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 HOXC5Q00444 222 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SLAQ13239 276 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SRSF5Q13243 272 aaKnown RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 MADCAM1Q13477 382 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 TRA2AQ13595 282 aaKnown RBP eCLIP2.21□□□□□ -2.06
SKA3-207ENST00000536239 GTF2H2Q13888 395 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GAMTQ14353 236 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 IL13RA2Q14627 380 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 HMGN3Q15651 99 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 PSG3Q16557 428 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 GUK1Q16774 197 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 CYP51A1Q16850 503 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 DUOXA1Q1HG43 343 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 HNRNPA1L2Q32P51 320 aaKnown RBP2.21□□□□□ -2.06
SKA3-207ENST00000536239 BSXQ3C1V8 233 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 SCGB2B2Q4G0G5 96 aa2.21□□□□□ -2.06
SKA3-207ENST00000536239 RFTN2Q52LD8 501 aaPredicted RBP2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms