RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 SERPINI1Q99574 410 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 FEM1AQ9BSK4 669 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 TMEM121Q9BTD3 319 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 THTPAQ9BU02 230 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 EDEM2Q9BV94 578 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 TRIM62Q9BVG3 475 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 TSSK1BQ9BXA7 367 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 NXF2Q9GZY0 626 aaKnown RBP2.81□□□□□ -1.96
USP48-215ENST00000534705 NAA50Q9GZZ1 169 aaKnown RBP2.81□□□□□ -1.96
USP48-215ENST00000534705 WWP1Q9H0M0 922 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 SIRPDQ9H106 197 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 ZNF385DQ9H6B1 395 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 EGLN3Q9H6Z9 239 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 B3GAT2Q9NPZ5 323 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 RPRD1BQ9NQG5 326 aaKnown RBP2.81□□□□□ -1.96
USP48-215ENST00000534705 DDIT4Q9NX09 232 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 COPS7AQ9UBW8 275 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 ZNF639Q9UID6 485 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 FBXO5Q9UKT4 447 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 ERVW-1Q9UQF0 538 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 RUVBL2Q9Y230 463 aaKnown RBP2.81□□□□□ -1.96
USP48-215ENST00000534705 AGRNO00468 2067 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 SDK2Q58EX2 2172 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 ACACBO00763 2458 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 CEP295Q9C0D2 2601 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 FREM2Q5SZK8 3169 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 CELSR3Q9NYQ7 3312 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 BSNQ9UPA5 3926 aa2.81□□□□□ -1.96
USP48-215ENST00000534705 CACNA1BQ00975 2339 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 SEC16AO15027 2179 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 IGHV4-30-2A0A087WSY4 118 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 A0A0D9SEW6 157 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TCRBV3S1A0A5B6 114 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 PQLC2LA1A4F0 135 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 MFSD2BA6NFX1 497 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 SAGE2PA6NJ88 616 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZNF716A6NP11 495 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 E9PAM4 449 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 F5H5T6 163 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 F8VVB4 439 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 F8VWA3 439 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 NPIPA3F8WFD2 350 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 K7ERQ8 282 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 LGALS8O00214 317 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TXNDC9O14530 226 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ABCD4O14678 606 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 CHEK1O14757 476 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 LRRTM2O43300 516 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 LANCL1O43813 399 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZNF780AO75290 641 aaPredicted RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 BCAS1O75363 584 aaPredicted RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 SRSF10O75494 262 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 CLDN11O75508 207 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 UPK1BO75841 260 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 GABARAPO95166 117 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 SERPINA3P01011 423 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 IFNA14P01570 189 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 IFNA16P05015 189 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 CALB1P05937 261 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 IGHV4-34P06331 123 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 CTSLP07711 333 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZNF735P0CB33 412 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TCN1P20061 433 aaPredicted RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 PAICSP22234 425 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 EDNRAP25101 427 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 DPP4P27487 766 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 PTPN6P29350 595 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 IL12AP29459 219 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 SDC4P31431 198 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 SERPINB5P36952 375 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 POLR2IP36954 125 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 SPAM1P38567 509 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 GRIA1P42261 906 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TPMTP51580 245 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 NKX2-5P52952 324 aaPredicted RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 CDH4P55283 916 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 KCNK10P57789 538 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 COPZ1P61923 177 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 RPS14P62263 151 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 RPP38P78345 283 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 ADARB1P78563 741 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 MRPS15P82914 257 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 GNA12Q03113 381 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZNF33AQ06730 810 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 BNIP2Q12982 314 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 GPR50Q13585 617 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 GK2Q14410 553 aaPredicted RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 PDK2Q15119 407 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZNF181Q2M3W8 571 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 HNRNPA1L2Q32P51 320 aaKnown RBP2.8□□□□□ -1.96
USP48-215ENST00000534705 Q3ZCU0 254 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 PARP15Q460N3 678 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ATAD3CQ5T2N8 411 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 C6orf52Q5T4I8 152 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 C1orf185Q5T7R7 199 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ARMC12Q5T9G4 340 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TIGD3Q6B0B8 471 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 TCEAL6Q6IPX3 200 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 ZNF544Q6NX49 715 aa2.8□□□□□ -1.96
USP48-215ENST00000534705 PRMT9Q6P2P2 845 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms