RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TRIM36Q9NQ86 728 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 A0A1W2PPL8 197 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 H3BMQ9 156 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 WISP2O76076 250 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 GABARAPO95166 117 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 SPARCP09486 303 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 ALOX5APP20292 161 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 NR4A1P22736 598 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 MEP1BQ16820 701 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 TP53I3Q53FA7 332 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 LIPKQ5VXJ0 399 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 VASH1Q7L8A9 365 aaPredicted RBP18.63■□□□□ 0.57
VPS28-208ENST00000527797 MCEMP1Q8IX19 187 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 PHC2Q8IXK0 858 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 OR10H5Q8NGA6 315 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 THEM6Q8WUY1 208 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 ZCCHC14Q8WYQ9 949 aaKnown RBP18.63■□□□□ 0.57
VPS28-208ENST00000527797 RNF122Q9H9V4 155 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 FOXD3Q9UJU5 478 aaPredicted RBP18.63■□□□□ 0.57
VPS28-208ENST00000527797 NOSIPQ9Y314 301 aaKnown RBP18.63■□□□□ 0.57
VPS28-208ENST00000527797 ZNF175Q9Y473 711 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 LALBAP00709 142 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 GADD45AP24522 165 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 RPS27P42677 84 aaKnown RBP18.63■□□□□ 0.57
VPS28-208ENST00000527797 ZNF133P52736 654 aaPredicted RBP18.63■□□□□ 0.57
VPS28-208ENST00000527797 TEX30Q5JUR7 227 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 PHYHD1Q5SRE7 291 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 C10orf128Q5T292 105 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 OTPQ5XKR4 325 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 SLC18B1Q6NT16 456 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 C19orf48Q6RUI8 117 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 PLXDC2Q6UX71 529 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 PLEKHG7Q6ZR37 379 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 KCTD20Q7Z5Y7 419 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 ZNF454Q8N9F8 522 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 SEC61A2Q9H9S3 476 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 ZNF71Q9NQZ8 489 aaPredicted RBP18.63■□□□□ 0.57
VPS28-208ENST00000527797 NDUFB11Q9NX14 153 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 LUZP4Q9P127 313 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 GNG8Q9UK08 70 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 ZMIZ1Q9ULJ6 1067 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 KLHDC2Q9Y2U9 406 aa18.63■□□□□ 0.57
VPS28-208ENST00000527797 A0A1B0GTH9 108 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 SLC22A20A6NK97 555 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 ZNF724A8MTY0 619 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 AIREO43918 545 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 NTF4P34130 210 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 TAS2R43P59537 309 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 CTF1Q16619 201 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 TIMM50Q3ZCQ8 353 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 ATCAYQ86WG3 371 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 EGFL6Q8IUX8 553 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 TUSC5Q8IXB3 177 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 ASB17Q8WXJ9 295 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 C11orf40Q8WZ69 217 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 ULBP2Q9BZM5 246 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 BCO1Q9HAY6 547 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 B3GAT2Q9NPZ5 323 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 PARPBPQ9NWS1 579 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 KCNG2Q9UJ96 466 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 ACACAQ13085 2346 aa18.62■□□□□ 0.57
VPS28-208ENST00000527797 MAGEB4O15481 346 aaPredicted RBP18.61■□□□□ 0.57
VPS28-208ENST00000527797 DHHO43323 396 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 TMCC2O75069 709 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 MRPL33O75394 65 aaKnown RBP18.61■□□□□ 0.57
VPS28-208ENST00000527797 TACSTD2P09758 323 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 PSKH1P11801 424 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 FCGR2AP12318 317 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 GUCA1AP43080 201 aaPredicted RBP18.61■□□□□ 0.57
VPS28-208ENST00000527797 GBX2P52951 348 aaPredicted RBP18.61■□□□□ 0.57
VPS28-208ENST00000527797 EGR3Q06889 387 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 LINC00303Q3SY05 128 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 FAM180AQ6UWF9 173 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 GPR137CQ8N3F9 429 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 ZFP41Q8N8Y5 198 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 TTYH2Q9BSA4 534 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 CDADC1Q9BWV3 514 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 SPTBN4Q9H254 2564 aa18.61■□□□□ 0.57
VPS28-208ENST00000527797 PNMA8CA0A1B0GUJ8 204 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 OR14I1A6ND48 311 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 METTL15A6NJ78 407 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 YES1P07947 543 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 FAM87AP0C7U9 286 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 CELP19835 753 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 PSMA1P25786 263 aaKnown RBP18.6■□□□□ 0.57
VPS28-208ENST00000527797 EIF2B1Q14232 305 aaKnown RBP18.6■□□□□ 0.57
VPS28-208ENST00000527797 PCK2Q16822 640 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 ZNF684Q5T5D7 378 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 FAM220AQ7Z4H9 259 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 OR51E2Q9H255 320 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 CALHM2Q9HA72 323 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 TUBD1Q9UJT1 453 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 CEP295Q9C0D2 2601 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 PRR32B1ATL7 298 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 E9PI62 339 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 UPK3AO75631 287 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 SULT1C4O75897 302 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 ATE1O95260 518 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 KRT8P05787 483 aa18.6■□□□□ 0.57
VPS28-208ENST00000527797 CDAP32320 146 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms