RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ARHGEF35A5YM69 484 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 RP2O75695 350 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 SRP72O76094 671 aaKnown RBP2.34□□□□□ -2.03
CD44-215ENST00000525241 RAB3DO95716 219 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 BCHEP06276 602 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 ADRA2AP08913 450 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 IFNA8P32881 189 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 PLP1P60201 277 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 BST1Q10588 318 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 CLINT1Q14677 625 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 ZSCAN26Q16670 478 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 FBXW9Q5XUX1 488 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 RUFY3Q7L099 469 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 WDR86Q86TI4 376 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 LYPD1Q8N2G4 141 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 MS4A15Q8N5U1 240 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 ARL6IP6Q8N6S5 226 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 PIBF1Q8WXW3 757 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 TUBGCP3Q96CW5 907 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 ETNK2Q9NVF9 386 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 IKZF2Q9UKS7 526 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 RFNGQ9Y644 331 aa2.34□□□□□ -2.03
CD44-215ENST00000525241 PLA2R1Q13018 1463 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 IGLV2-18A0A075B6J9 118 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 A0A0U1RQS6 177 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 F6UB75 175 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 DYNC1I1O14576 645 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 AIFM1O95831 613 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 SERPIND1P05546 499 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 CALM1P0DP23 149 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 CALM2P0DP24 149 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 CALM3P0DP25 149 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 NPY1RP25929 384 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 MRPS22P82650 360 aaKnown RBP2.33□□□□□ -2.04
CD44-215ENST00000525241 LOXL1Q08397 574 aaPredicted RBP2.33□□□□□ -2.04
CD44-215ENST00000525241 BST2Q10589 180 aaKnown RBP2.33□□□□□ -2.04
CD44-215ENST00000525241 MAB21L1Q13394 359 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 ZNF684Q5T5D7 378 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 ANKRD22Q5VYY1 191 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 CEMP1Q6PRD7 247 aaPredicted RBP2.33□□□□□ -2.04
CD44-215ENST00000525241 HMGN2P46Q86SG4 172 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 OAFQ86UD1 273 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 OR1S2Q8NGQ3 325 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 RHEBL1Q8TAI7 183 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 ESR2Q92731 530 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 LINC00477Q96M19 166 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 ZNF681Q96N22 645 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 SLC25A2Q9BXI2 301 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 ING2Q9H160 280 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 UBE2ZQ9H832 354 aaPredicted RBP2.33□□□□□ -2.04
CD44-215ENST00000525241 HMG20AQ9NP66 347 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 GGA2Q9UJY4 613 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 WIF1Q9Y5W5 379 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 TMEM14AQ9Y6G1 99 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 TET2Q6N021 2002 aaPredicted RBP2.33□□□□□ -2.04
CD44-215ENST00000525241 CNTNAP1P78357 1384 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 ATAD2BQ9ULI0 1458 aa2.33□□□□□ -2.04
CD44-215ENST00000525241 PPP1R2P9O14990 202 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 MRPS12O15235 138 aaKnown RBP2.32□□□□□ -2.04
CD44-215ENST00000525241 RBFOX2O43251 390 aaKnown RBP eCLIP2.32□□□□□ -2.04
CD44-215ENST00000525241 ZNF207O43670 478 aaKnown RBP2.32□□□□□ -2.04
CD44-215ENST00000525241 RBBP9O75884 186 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 SLC25A14O95258 325 aaPredicted RBP2.32□□□□□ -2.04
CD44-215ENST00000525241 HLA-DPB1P04440 258 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 LINC00869P0C866 280 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 GDI1P31150 447 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 CASP14P31944 242 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 MAS1LP35410 378 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 CEACAM6P40199 344 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 ZNF138P52744 262 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 ARG2P78540 354 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 TCP10Q12799 353 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 PON2Q15165 354 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 ZNF880Q6PDB4 577 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 KDELC1Q6UW63 502 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 ZNF836Q6ZNA1 936 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 SHISA6Q6ZSJ9 500 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 MMAAQ8IVH4 418 aaKnown RBP2.32□□□□□ -2.04
CD44-215ENST00000525241 ZNF461Q8TAF7 563 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 ABHD3Q8WU67 409 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 TM4SF18Q96CE8 201 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 ZNF2Q9BSG1 426 aaPredicted RBP2.32□□□□□ -2.04
CD44-215ENST00000525241 GCOM2Q9BZD3 368 aaPredicted RBP2.32□□□□□ -2.04
CD44-215ENST00000525241 PARP12Q9H0J9 701 aaKnown RBP2.32□□□□□ -2.04
CD44-215ENST00000525241 SYNDIG1Q9H7V2 258 aa2.32□□□□□ -2.04
CD44-215ENST00000525241 KIF26AQ9ULI4 1882 aaPredicted RBP2.32□□□□□ -2.04
CD44-215ENST00000525241 IGLV1-50A0A075B6I6 118 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 VAMP5O95183 116 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 CST1P01037 141 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 MCF2P10911 925 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 ZNF43P17038 809 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 SSR4P51571 173 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 YWHAGP61981 247 aaKnown RBP eCLIP2.31□□□□□ -2.04
CD44-215ENST00000525241 ACTG2P63267 376 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 ECH1Q13011 328 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 ZMYND11Q15326 602 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 TGFBIQ15582 683 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 RABL6Q3YEC7 729 aaPredicted RBP2.31□□□□□ -2.04
CD44-215ENST00000525241 KRTAP13-2Q52LG2 175 aa2.31□□□□□ -2.04
CD44-215ENST00000525241 XKR4Q5GH76 650 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms