RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 C15orf54Q8N8G6 183 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ACBD4Q8NC06 268 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM174AQ8TBP5 190 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 FATE1Q969F0 183 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 TCTN2Q96GX1 697 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 LRFN5Q96NI6 719 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 TOX2Q96NM4 488 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PTCHD1Q96NR3 888 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ACTRT3Q9BYD9 372 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM124BQ9H5Z6 455 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 SRA1Q9HD15 236 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 SIDT1Q9NXL6 827 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 P2RX2Q9UBL9 471 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 OR14J1Q9UGF5 321 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 IKZF2Q9UKS7 526 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 COL4A5P29400 1685 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PRUNE2Q8WUY3 3088 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ARRDC5A6NEK1 342 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 UMAD1C9J7I0 102 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ARL6IP5O75915 188 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ZIC2O95409 532 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 HOXB5P09067 269 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 GSTM3P21266 225 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 AK4P27144 223 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 BPIFB3P59826 476 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 GGTA1PQ4G0N0 100 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 AKR1C8PQ5T2L2 129 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 GRHL2Q6ISB3 625 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 STAC2Q6ZMT1 411 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF574Q6ZN55 896 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PGAP1Q75T13 922 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 P4HA3Q7Z4N8 544 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PARGQ86W56 976 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 CACUL1Q86Y37 369 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PNLDC1Q8NA58 520 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 OR4C6Q8NH72 309 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 TM4SF18Q96CE8 201 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 FOXRED1Q96CU9 486 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 NEURL3Q96EH8 262 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 SYT4Q9H2B2 425 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 C8orf33Q9H7E9 229 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 ZDHHC3Q9NYG2 299 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 VSIG4Q9Y279 399 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 NRXN2Q9P2S2 1712 aa6.6□□□□□ -1.35
LIMCH1-207ENST00000508466 PTPRDP23468 1912 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 MYOFQ9NZM1 2061 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CCDC163A0A0D9SF12 145 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 IRGMA1A4Y4 181 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 H0YIV9 168 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 J3QRE1 110 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 LATO43561 262 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 TCF21O43680 179 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CA11O75493 328 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 HEXAP06865 529 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CD79AP11912 226 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 TPT1P13693 172 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 HOXA5P20719 270 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 PRPH2P23942 346 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 PSMA3P25788 255 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 IL2RGP31785 369 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 PLA2G5P39877 138 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 MNDAP41218 407 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 MC3RP41968 323 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 MECP2P51608 486 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CAV2P51636 162 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 STARD6P59095 220 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 NUTF2P61970 127 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 HTRA3P83110 453 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 SHC2P98077 582 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 TGM3Q08188 693 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CDK5R1Q15078 307 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CTXN3Q4LDR2 81 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 UQCC3Q6UW78 93 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM180AQ6UWF9 173 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 LRRC69Q6ZNQ3 347 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 Q6ZVH6 145 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CARFQ8N187 725 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 GABRG1Q8N1C3 465 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CHST4Q8NCG5 386 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 SLC16A11Q8NCK7 471 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 OR10AD1Q8NGE0 317 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 NTNG2Q96CW9 530 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM83CQ9BQN1 747 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 MMP26Q9NRE1 261 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 PADI1Q9ULC6 663 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 PCDHB8Q9UN66 801 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 FRYLO94915 3013 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 ANKRD31Q8N7Z5 1873 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 DOCK4Q8N1I0 1966 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 A0A1W2PPC1 479 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 LOC390937A0A1W2PQ73 354 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 UNC119BA6NIH7 251 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 OR52A4PA6NMU1 304 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 TGM5O43548 720 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 GLSO94925 669 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 SCGB1D2O95969 90 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 C8GP07360 202 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 HIST1H1CP16403 213 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 CRABP1P29762 137 aa6.59□□□□□ -1.35
LIMCH1-207ENST00000508466 AGTR1P30556 359 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms