RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 FNDC8Q8TC99 324 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 GNPDA2Q8TDQ7 276 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 RASD2Q96D21 266 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 RBP7Q96R05 134 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 SH3GL3Q99963 347 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 CADM1Q9BY67 442 aaKnown RBP11.39□□□□□ -0.59
TCOF1-209ENST00000506630 REEP1Q9H902 201 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 NOX3Q9HBY0 568 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 ZNF224Q9NZL3 707 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 METRNQ9UJH8 293 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 POMPQ9Y244 141 aa11.39□□□□□ -0.59
TCOF1-209ENST00000506630 ANK3Q12955 4377 aaKnown RBP11.38□□□□□ -0.59
TCOF1-209ENST00000506630 GSC2O15499 205 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 CCNB2O95067 398 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 DANCRP0C864 163 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 PATE4P0C8F1 98 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 FPR3P25089 353 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 CALCRP30988 508 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 CDAP32320 146 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 CDKN1AP38936 164 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 GIPRP48546 466 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 ERFP50548 548 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 FABP6P51161 128 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 ZNF133P52736 654 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-209ENST00000506630 FXYD6P3P58550 94 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 RAB1AP62820 205 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 KRR1Q13601 381 aaKnown RBP11.38□□□□□ -0.59
TCOF1-209ENST00000506630 MESTQ5EB52 335 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 THEM4Q5T1C6 240 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 OR2T5Q6IEZ7 315 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 C1orf94Q6P1W5 598 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 SMARCD3Q6STE5 483 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 FAM122BQ7Z309 247 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 SKA3Q8IX90 412 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 LRRC18Q8N456 261 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 LINC00471Q8N535 108 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 FAM169BQ8N8A8 192 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 OR4C15Q8NGM1 316 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 OR2T29Q8NH02 315 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 IGFBPL1Q8WX77 278 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 GTPBP3Q969Y2 492 aaKnown RBP11.38□□□□□ -0.59
TCOF1-209ENST00000506630 GPX7Q96SL4 187 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-209ENST00000506630 DHRS9Q9BPW9 319 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 OR52D1Q9H346 318 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 DENND2DQ9H6A0 471 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-209ENST00000506630 RNF121Q9H920 327 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 SMURF2Q9HAU4 748 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 NRIP3Q9NQ35 241 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 VNN3Q9NY84 501 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 B3GNT2Q9NY97 397 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 SAMHD1Q9Y3Z3 626 aaKnown RBP11.38□□□□□ -0.59
TCOF1-209ENST00000506630 U3KQV3 271 aa11.38□□□□□ -0.59
TCOF1-209ENST00000506630 FBN1P35555 2871 aaKnown RBP11.38□□□□□ -0.59
TCOF1-209ENST00000506630 A0A1W2PPL8 197 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 SOCS2O14508 198 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 PPP1R3DO95685 299 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 CST1P01037 141 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 TP53P04637 393 aaPredicted RBP11.37□□□□□ -0.59
TCOF1-209ENST00000506630 NPR2P20594 1047 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 SDHAP31040 664 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 GSSP48637 474 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 RPS6KA3P51812 740 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 HMGA2P52926 109 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 TSPAN31Q12999 210 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 SGCAQ16586 387 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 SLC36A2Q495M3 483 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 NRN1LQ496H8 165 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 AGAP6Q5VW22 663 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 GPR139Q6DWJ6 353 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 TMEM53Q6P2H8 277 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 SLC25A47Q6Q0C1 308 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 VHLLQ6RSH7 139 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 DPY19L2P2Q6ZN68 376 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 FBXL14Q8N1E6 418 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 MUC15Q8N387 334 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 FGFBP3Q8TAT2 258 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 CANT1Q8WVQ1 401 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 TMEM158Q8WZ71 300 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 NMD3Q96D46 503 aaKnown RBP11.37□□□□□ -0.59
TCOF1-209ENST00000506630 TRAF4Q9BUZ4 470 aaPredicted RBP11.37□□□□□ -0.59
TCOF1-209ENST00000506630 IFT27Q9BW83 186 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 CHID1Q9BWS9 393 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 KCNN2Q9H2S1 579 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 SLC7A8Q9UHI5 535 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 UGT2A1Q9Y4X1 527 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 IER3IP1Q9Y5U9 82 aa11.37□□□□□ -0.59
TCOF1-209ENST00000506630 IGHV2OR16-5A0A0B4J2B6 119 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 SLC22A23A1A5C7 686 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 PRSS37A4D1T9 235 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 GNGT2O14610 69 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 TMCC2O75069 709 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 PAX1P15863 534 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 ZNF14P17017 642 aaPredicted RBP11.36□□□□□ -0.59
TCOF1-209ENST00000506630 SLC6A6P31641 620 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 TTKP33981 857 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 GUCA1AP43080 201 aaPredicted RBP11.36□□□□□ -0.59
TCOF1-209ENST00000506630 ATP5J2P56134 94 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 MRPS34P82930 218 aaKnown RBP11.36□□□□□ -0.59
TCOF1-209ENST00000506630 RAB39AQ14964 217 aa11.36□□□□□ -0.59
TCOF1-209ENST00000506630 RFX4Q33E94 735 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms