RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SORDQ00796 357 aa8.8□□□□□ -1
NUP54-203ENST00000504173 FMODQ06828 376 aa8.8□□□□□ -1
NUP54-203ENST00000504173 NPRL3Q12980 569 aa8.8□□□□□ -1
NUP54-203ENST00000504173 RIPK1Q13546 671 aa8.8□□□□□ -1
NUP54-203ENST00000504173 SNTB1Q13884 538 aaKnown RBP8.8□□□□□ -1
NUP54-203ENST00000504173 PTGES3Q15185 160 aaKnown RBP8.8□□□□□ -1
NUP54-203ENST00000504173 STK11Q15831 433 aa8.8□□□□□ -1
NUP54-203ENST00000504173 HIST3H3Q16695 136 aa8.8□□□□□ -1
NUP54-203ENST00000504173 ZIK1Q3SY52 487 aaPredicted RBP8.8□□□□□ -1
NUP54-203ENST00000504173 THEM4Q5T1C6 240 aa8.8□□□□□ -1
NUP54-203ENST00000504173 TMEM236Q5W0B7 351 aa8.8□□□□□ -1
NUP54-203ENST00000504173 OR7E24Q6IFN5 339 aa8.8□□□□□ -1
NUP54-203ENST00000504173 ACSM5Q6NUN0 579 aa8.8□□□□□ -1
NUP54-203ENST00000504173 LRFN4Q6PJG9 635 aa8.8□□□□□ -1
NUP54-203ENST00000504173 SLC25A47Q6Q0C1 308 aa8.8□□□□□ -1
NUP54-203ENST00000504173 MEX3BQ6ZN04 569 aaKnown RBP8.8□□□□□ -1
NUP54-203ENST00000504173 GALNT4Q8N4A0 578 aa8.8□□□□□ -1
NUP54-203ENST00000504173 CYB561A3Q8NBI2 242 aa8.8□□□□□ -1
NUP54-203ENST00000504173 C1orf162Q8NEQ5 155 aaPredicted RBP8.8□□□□□ -1
NUP54-203ENST00000504173 OR1K1Q8NGR3 316 aa8.8□□□□□ -1
NUP54-203ENST00000504173 NMD3Q96D46 503 aaKnown RBP8.8□□□□□ -1
NUP54-203ENST00000504173 ZNF837Q96EG3 531 aaPredicted RBP8.8□□□□□ -1
NUP54-203ENST00000504173 PLEKHA8Q96JA3 519 aa8.8□□□□□ -1
NUP54-203ENST00000504173 SNX18Q96RF0 628 aa8.8□□□□□ -1
NUP54-203ENST00000504173 NMNAT3Q96T66 252 aa8.8□□□□□ -1
NUP54-203ENST00000504173 FOXB1Q99853 325 aa8.8□□□□□ -1
NUP54-203ENST00000504173 GABARAPL3Q9BY60 117 aa8.8□□□□□ -1
NUP54-203ENST00000504173 PRRG3Q9BZD7 231 aa8.8□□□□□ -1
NUP54-203ENST00000504173 SYT4Q9H2B2 425 aa8.8□□□□□ -1
NUP54-203ENST00000504173 C8orf4Q9NR00 106 aa8.8□□□□□ -1
NUP54-203ENST00000504173 VSX1Q9NZR4 365 aaPredicted RBP8.8□□□□□ -1
NUP54-203ENST00000504173 TLN2Q9Y4G6 2542 aa8.79□□□□□ -1
NUP54-203ENST00000504173 IGKV1D-43A0A0B4J1Z2 117 aa8.79□□□□□ -1
NUP54-203ENST00000504173 TUBAL3A6NHL2 446 aa8.79□□□□□ -1
NUP54-203ENST00000504173 ZAR1LA6NP61 321 aa8.79□□□□□ -1
NUP54-203ENST00000504173 SLC16A7O60669 478 aa8.79□□□□□ -1
NUP54-203ENST00000504173 KHDRBS3O75525 346 aaKnown RBP8.79□□□□□ -1
NUP54-203ENST00000504173 ATP6V1G2O95670 118 aa8.79□□□□□ -1
NUP54-203ENST00000504173 INHBBP09529 407 aa8.79□□□□□ -1
NUP54-203ENST00000504173 IGFBP2P18065 325 aa8.79□□□□□ -1
NUP54-203ENST00000504173 EPHA2P29317 976 aa8.79□□□□□ -1
NUP54-203ENST00000504173 POLR2IP36954 125 aaKnown RBP8.79□□□□□ -1
NUP54-203ENST00000504173 PEX19P40855 299 aa8.79□□□□□ -1
NUP54-203ENST00000504173 ZNF133P52736 654 aaPredicted RBP8.79□□□□□ -1
NUP54-203ENST00000504173 CRMP1Q14194 572 aa8.79□□□□□ -1
NUP54-203ENST00000504173 GABRA6Q16445 453 aa8.79□□□□□ -1
NUP54-203ENST00000504173 SNAPC1Q16533 368 aa8.79□□□□□ -1
NUP54-203ENST00000504173 C10orf128Q5T292 105 aa8.79□□□□□ -1
NUP54-203ENST00000504173 OGFRL1Q5TC84 451 aaPredicted RBP8.79□□□□□ -1
NUP54-203ENST00000504173 DNM1P34Q6PK57 102 aa8.79□□□□□ -1
NUP54-203ENST00000504173 KLHL24Q6TFL4 600 aa8.79□□□□□ -1
NUP54-203ENST00000504173 ZNF813Q6ZN06 617 aa8.79□□□□□ -1
NUP54-203ENST00000504173 PACRGLQ8N7B6 248 aa8.79□□□□□ -1
NUP54-203ENST00000504173 SLC37A3Q8NCC5 494 aa8.79□□□□□ -1
NUP54-203ENST00000504173 NPEPL1Q8NDH3 523 aa8.79□□□□□ -1
NUP54-203ENST00000504173 S100PBPQ96BU1 408 aa8.79□□□□□ -1
NUP54-203ENST00000504173 SLC38A2Q96QD8 506 aa8.79□□□□□ -1
NUP54-203ENST00000504173 USB1Q9BQ65 265 aaKnown RBP8.79□□□□□ -1
NUP54-203ENST00000504173 MED18Q9BUE0 208 aa8.79□□□□□ -1
NUP54-203ENST00000504173 OR10A4Q9H209 315 aa8.79□□□□□ -1
NUP54-203ENST00000504173 VCXQ9H320 206 aa8.79□□□□□ -1
NUP54-203ENST00000504173 FN3KQ9H479 309 aa8.79□□□□□ -1
NUP54-203ENST00000504173 TOR3AQ9H497 397 aa8.79□□□□□ -1
NUP54-203ENST00000504173 RERGLQ9H628 205 aa8.79□□□□□ -1
NUP54-203ENST00000504173 RPRD1BQ9NQG5 326 aaKnown RBP8.79□□□□□ -1
NUP54-203ENST00000504173 CMC2Q9NRP2 79 aa8.79□□□□□ -1
NUP54-203ENST00000504173 TMEM38BQ9NVV0 291 aa8.79□□□□□ -1
NUP54-203ENST00000504173 TVP23BQ9NYZ1 205 aa8.79□□□□□ -1
NUP54-203ENST00000504173 NDRG3Q9UGV2 375 aa8.79□□□□□ -1
NUP54-203ENST00000504173 METRNQ9UJH8 293 aa8.79□□□□□ -1
NUP54-203ENST00000504173 HCFC1P51610 2035 aa8.79□□□□□ -1
NUP54-203ENST00000504173 HIVEP2P31629 2446 aa8.79□□□□□ -1
NUP54-203ENST00000504173 A0A096LPE4 126 aa8.78□□□□□ -1
NUP54-203ENST00000504173 A0A1W2PPL8 197 aa8.78□□□□□ -1
NUP54-203ENST00000504173 A0A1W2PPZ6 126 aa8.78□□□□□ -1
NUP54-203ENST00000504173 OR6C68A6NDL8 312 aa8.78□□□□□ -1
NUP54-203ENST00000504173 OR5H1A6NKK0 313 aa8.78□□□□□ -1
NUP54-203ENST00000504173 SURF4O15260 269 aa8.78□□□□□ -1
NUP54-203ENST00000504173 SNAP29O95721 258 aa8.78□□□□□ -1
NUP54-203ENST00000504173 B4GALT1P15291 398 aa8.78□□□□□ -1
NUP54-203ENST00000504173 PPP3CBP16298 524 aa8.78□□□□□ -1
NUP54-203ENST00000504173 CTLA4P16410 223 aa8.78□□□□□ -1
NUP54-203ENST00000504173 PAICSP22234 425 aaKnown RBP8.78□□□□□ -1
NUP54-203ENST00000504173 CRABP1P29762 137 aa8.78□□□□□ -1
NUP54-203ENST00000504173 GUCA1AP43080 201 aaPredicted RBP8.78□□□□□ -1
NUP54-203ENST00000504173 KIR2DL3P43628 341 aa8.78□□□□□ -1
NUP54-203ENST00000504173 CENPAP49450 140 aa8.78□□□□□ -1
NUP54-203ENST00000504173 UBE2NP61088 152 aaKnown RBP8.78□□□□□ -1
NUP54-203ENST00000504173 ETFDHQ16134 617 aa8.78□□□□□ -1
NUP54-203ENST00000504173 TBRG1Q3YBR2 411 aa8.78□□□□□ -1
NUP54-203ENST00000504173 HIKESHIQ53FT3 197 aa8.78□□□□□ -1
NUP54-203ENST00000504173 TIMM23BQ5SRD1 257 aa8.78□□□□□ -1
NUP54-203ENST00000504173 SLX4IPQ5VYV7 408 aa8.78□□□□□ -1
NUP54-203ENST00000504173 ALKBH2Q6NS38 261 aa8.78□□□□□ -1
NUP54-203ENST00000504173 ANKRD16Q6P6B7 361 aa8.78□□□□□ -1
NUP54-203ENST00000504173 PHC2Q8IXK0 858 aa8.78□□□□□ -1
NUP54-203ENST00000504173 DMRTC2Q8IXT2 367 aaPredicted RBP8.78□□□□□ -1
NUP54-203ENST00000504173 C17orf78Q8N4C9 275 aa8.78□□□□□ -1
NUP54-203ENST00000504173 OR9Q1Q8NGQ5 310 aa8.78□□□□□ -1
NUP54-203ENST00000504173 OR52N5Q8NH56 324 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms