RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 FAM174AQ8TBP5 190 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF775Q96BV0 537 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 RASD2Q96D21 266 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 CBX7O95931 251 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 MYF5P13349 255 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 HMGA2P52926 109 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 HSD17B7P56937 341 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 DCAF7P61962 342 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 Q499Y3 187 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 ZFPM2Q8WW38 1151 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 EDAQ92838 391 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC46A1Q96NT5 459 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SSX3Q99909 188 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC25A32Q9H2D1 315 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC25A19Q9HC21 320 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 BCL2L10Q9HD36 194 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SMCO4Q9NRQ5 59 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 F5H5K5 113 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SYT7O43581 403 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 NKX6-1P78426 367 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 MEF2DQ14814 521 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 ARHGAP11BQ3KRB8 267 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SPIN3Q5JUX0 258 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 CAMKMTQ7Z624 323 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 MARCH3Q86UD3 253 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 KDM8Q8N371 416 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 OR11H7Q8NGC8 314 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 OR14A16Q8NHC5 309 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 WDR89Q96FK6 387 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 ELOVL3Q9HB03 270 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 PTPRFP10586 1907 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 BLACEA4D250 179 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 G3V3Y1 287 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 GREM1O60565 184 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 HOXB5P09067 269 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 POU3F4P49335 361 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SPOCK1Q08629 439 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC9A3R2Q15599 337 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 GSG1Q2KHT4 349 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 LINC00303Q3SY05 128 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 SFRP5Q5T4F7 317 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 NIPAL3Q6P499 406 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 OR5H2Q8NGV7 314 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 OR14K1Q8NGZ2 314 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 ZG16BQ96DA0 208 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 ANKRD19PQ9H560 264 aa14.91□□□□□ -0.02
CCDC88B-209ENST00000494080 CTSVO60911 334 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 SRFP11831 508 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF28P17035 718 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 SSX2Q16385 188 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 LGALSLQ3ZCW2 172 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 STACQ99469 402 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 SCN3AQ9NY46 2000 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 RGPD4Q7Z3J3 1758 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 PMS2P2O95744 297 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 GLAP06280 429 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 MMP15P51511 669 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 TMEM92Q6UXU6 159 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF679Q8IYX0 411 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 CXorf58Q96LI9 332 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 CDC6Q99741 560 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 NAA11Q9BSU3 229 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 URM1Q9BTM9 101 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 TAS2R5Q9NYW4 299 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 ALPK2Q86TB3 2170 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 SPTY2D1-AS1A0A0U1RR47 76 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 SURF4O15260 269 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 EPXP11678 715 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC2A5P22732 501 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 TAS2R20P59543 309 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 TSLPQ969D9 159 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 GAREM1Q9H706 876 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 NDRG3Q9UGV2 375 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 SUSD5O60279 629 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 DOK2O60496 412 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 PTHLHP12272 177 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 FOLR3P41439 243 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 GNMTQ14749 295 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 PRSS41Q7RTY9 318 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 CA13Q8N1Q1 262 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 FBLIM1Q8WUP2 373 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 TMED6Q8WW62 240 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 ZC3HAV1LQ96H79 300 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 ACKR4Q9NPB9 350 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 ADAM18Q9Y3Q7 739 aa14.9□□□□□ -0.02
CCDC88B-209ENST00000494080 EFCAB7A8K855 629 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 HSPA12AO43301 675 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 SYNGR4O95473 234 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 MPIG6BO95866 241 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 HLXQ14774 488 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 TUSC1Q2TAM9 212 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 RHOUQ7L0Q8 258 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 GPR137CQ8N3F9 429 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 GOT1L1Q8NHS2 421 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 ELF5Q9UKW6 265 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 GZMMP51124 257 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 BAMBIQ13145 260 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 KIAA0907Q7Z7F0 614 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 SIRT6Q8N6T7 355 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 C16orf52Q8NHV5 167 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms