RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 TAPBPLQ9BX59 468 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SEMA4CQ9C0C4 833 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 AICDAQ9GZX7 198 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 A4GNTQ9UNA3 340 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 COL6A3P12111 3177 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MEIS3P1A6NDR6 274 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 LINC00587B1AMM8 73 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ACHEP22303 614 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TPBGQ13641 420 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF674Q2M3X9 581 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TPRA1Q86W33 373 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR4K17Q8NGC6 315 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR11H4Q8NGC9 324 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 VRK1Q99986 396 aaPredicted RBP9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MICU1Q9BPX6 476 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 C19orf43Q9BQ61 176 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ABRACLQ9P1F3 81 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TRBV23-1A0A0A0MS06 115 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TMEM129A0AVI4 362 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MASP2O00187 686 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SMIM6P0DI80 62 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 LIPCP11150 499 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 NQO2P16083 231 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CSF2RBP32927 897 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 RGS19P49795 217 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 FABP9Q0Z7S8 132 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CAMK2DQ13557 499 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 FAM27D1Q5T7N8 215 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF565Q8N9K5 539 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR10H5Q8NGA6 315 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 EDAQ92838 391 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 UBQLN3Q9H347 655 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 HINT3Q9NQE9 182 aaKnown RBP9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PISDQ9UG56 409 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GPR160Q9UJ42 338 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PURGQ9UJV8 347 aaKnown RBP9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TRBV11-1A0A0K0K1C0 115 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 A0A1B0GV50 99 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TLCD2A6NGC4 264 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GATCO43716 136 aaKnown RBP9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SRPX2O60687 465 aaPredicted RBP9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MAKP20794 623 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PRKAR1BP31321 381 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CLDN12P56749 244 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CHAF1BQ13112 559 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SNTB1Q13884 538 aaKnown RBP9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CBLN3Q6UW01 205 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 Q96M85 177 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR1F2PQ96R84 312 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MESP1Q9BRJ9 268 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CST11Q9H112 138 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TAS2R8Q9NYW2 309 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CAMK2AQ9UQM7 478 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CELSR3Q9NYQ7 3312 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 A0A0B4J293 547 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 C9J4A7 227 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CDC42EP2O14613 210 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 AHSA1O95433 338 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TXNDC12O95881 172 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CYB5AP00167 134 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 AMY2AP04746 511 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SPP1P10451 314 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TACR3P29371 465 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 NKX6-1P78426 367 aaPredicted RBP9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MELKQ14680 651 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PGGHGQ32M88 737 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF585AQ6P3V2 769 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 BEND4Q6ZU67 534 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF550Q7Z398 422 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 STK35Q8TDR2 534 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 DCUN1D4Q92564 292 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 RAB3CQ96E17 227 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 C4orf36Q96KX1 117 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ASB6Q9NWX5 421 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 C19orf53Q9UNZ5 99 aaPredicted RBP9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 NEUROG3Q9Y4Z2 214 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 EFCAB7A8K855 629 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 APEHP13798 732 aaKnown RBP9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SPI1P17947 270 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SELENOPP49908 381 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 NDUFA6P56556 154 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CLINT1Q14677 625 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 FCRLAQ7L513 359 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF227Q86WZ6 799 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 DNAAF1Q8NEP3 725 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR52H1Q8NGJ2 320 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 LGALS14Q8TCE9 139 aa9.8□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TRAV18A0A075B6X5 111 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF705GA8MUZ8 300 aaPredicted RBP9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MCRIP1C9JLW8 97 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MPC2O95563 127 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 IFNA10P01566 189 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MAS1P04201 325 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SLC35E2P0CK97 266 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GIMD1P0DJR0 217 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 RAB6AP20340 208 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SRYQ05066 204 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TMEM225Q6GV28 225 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ULK3Q6PHR2 472 aa9.79□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR13C5Q8NGS8 318 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms