RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 KLF10Q13118 480 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 MAPRE2Q15555 327 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 SGCAQ16586 387 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 NRN1LQ496H8 165 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 CYBRD1Q53TN4 286 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 PABPC1L2AQ5JQF8 200 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 RFLNBQ8N5W9 214 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 ZNF519Q8TB69 540 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 NSMAFQ92636 917 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 TPD52L3Q96J77 140 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 BCL2L14Q9BZR8 327 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 POLR2J2Q9GZM3 115 aaKnown RBP13.04□□□□□ -0.32
LIMS3-203ENST00000480744 POLR2J3Q9H1A7 115 aaKnown RBP13.04□□□□□ -0.32
LIMS3-203ENST00000480744 SLCO1C1Q9NYB5 712 aa13.04□□□□□ -0.32
LIMS3-203ENST00000480744 STX18Q9P2W9 335 aaKnown RBP13.04□□□□□ -0.32
LIMS3-203ENST00000480744 LOC100653049A0A140TA62 436 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 BBIP1A8MTZ0 92 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 CENPBD1B2RD01 187 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 KRT34O76011 436 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 SNAP29O95721 258 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 TFP02787 698 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 MMP7P09237 267 aaPredicted RBP13.03□□□□□ -0.32
LIMS3-203ENST00000480744 ZNF250P15622 560 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 GNGT1P63211 74 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 MRPS11P82912 194 aaKnown RBP13.03□□□□□ -0.32
LIMS3-203ENST00000480744 LAPTM4AQ15012 233 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 COQ5Q5HYK3 327 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 C10orf128Q5T292 105 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 ARMC4Q5T2S8 1044 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 AVPI1Q5T686 147 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 OR1J1Q8NGS3 322 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 GTF3AQ92664 365 aaKnown RBP13.03□□□□□ -0.32
LIMS3-203ENST00000480744 HDAC2Q92769 488 aaKnown RBP13.03□□□□□ -0.32
LIMS3-203ENST00000480744 TMEM186Q96B77 213 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 ZNF583Q96ND8 569 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 SEPHS2Q99611 448 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 ELAC2Q9BQ52 826 aaKnown RBP13.03□□□□□ -0.32
LIMS3-203ENST00000480744 FAM107BQ9H098 131 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 OCEL1Q9H607 264 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 SIAEQ9HAT2 523 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 HIF1ANQ9NWT6 349 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 ARMCX1Q9P291 453 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 METRNQ9UJH8 293 aa13.03□□□□□ -0.32
LIMS3-203ENST00000480744 IGLV3-9A0A075B6K5 115 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 FAM220BPB1ANY3 271 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 RP2O75695 350 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 NPPAP01160 153 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 IGF2P01344 180 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 MT-ND5P03915 603 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 MSMBP08118 114 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 GAAP10253 952 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 THRBP10828 461 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 IFI30P13284 250 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 ZNF32P17041 273 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 ITGA2P17301 1181 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 STOMP27105 288 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 KDELR2P33947 212 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 MRPS34P82930 218 aaKnown RBP13.02□□□□□ -0.33
LIMS3-203ENST00000480744 MVKQ03426 396 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 TSTQ16762 297 aaKnown RBP13.02□□□□□ -0.33
LIMS3-203ENST00000480744 PCGF3Q3KNV8 242 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 ALG10Q5BKT4 473 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 SPATA46Q5T0L3 261 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 SHQ1Q6PI26 577 aaKnown RBP13.02□□□□□ -0.33
LIMS3-203ENST00000480744 PCYOX1LQ8NBM8 494 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 CPEB3Q8NE35 698 aaKnown RBP13.02□□□□□ -0.33
LIMS3-203ENST00000480744 OR2T12Q8NG77 320 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 AKR7LQ8NHP1 331 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 LRRC37BQ96QE4 947 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 RACGAP1Q9H0H5 632 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 TXNIPQ9H3M7 391 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 METTL17Q9H7H0 456 aaPredicted RBP13.02□□□□□ -0.33
LIMS3-203ENST00000480744 MRGBPQ9NV56 204 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 GID8Q9NWU2 228 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 GRIP1Q9Y3R0 1128 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 UGT2A1Q9Y4X1 527 aa13.02□□□□□ -0.33
LIMS3-203ENST00000480744 IGKV1D-43A0A0B4J1Z2 117 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 C5orf49A4QMS7 147 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 NR2C1P13056 603 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 IFNA8P32881 189 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 YAP1P46937 504 aaKnown RBP13.01□□□□□ -0.33
LIMS3-203ENST00000480744 GDI2P50395 445 aaKnown RBP13.01□□□□□ -0.33
LIMS3-203ENST00000480744 ZNF133P52736 654 aaPredicted RBP13.01□□□□□ -0.33
LIMS3-203ENST00000480744 ERVK-25P63136 954 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 ST3GAL3Q11203 375 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 MOGQ16653 247 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 THSD4Q6ZMP0 1018 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 USP51Q70EK9 711 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 IGFN1Q86VF2 1251 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 MEX3DQ86XN8 651 aaKnown RBP13.01□□□□□ -0.33
LIMS3-203ENST00000480744 MICU2Q8IYU8 434 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 OR51F2Q8NH61 342 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 LIPHQ8WWY8 451 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 NABP1Q96AH0 204 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 BPIFA2Q96DR5 249 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 PRRC1Q96M27 445 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 SMURF2Q9HAU4 748 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 DECR2Q9NUI1 292 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 RHCGQ9UBD6 479 aa13.01□□□□□ -0.33
LIMS3-203ENST00000480744 EIF3KQ9UBQ5 218 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms