RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 RPL27P61353 136 aaKnown RBP11.98□□□□□ -0.49
USP4-206ENST00000461553 MRPS34P82930 218 aaKnown RBP11.98□□□□□ -0.49
USP4-206ENST00000461553 FMODQ06828 376 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 FKBP9P1Q75LS8 142 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 LRP11Q86VZ4 500 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 PAQR4Q8N4S7 273 aaPredicted RBP11.98□□□□□ -0.49
USP4-206ENST00000461553 ICA1LQ8NDH6 482 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 FNDC8Q8TC99 324 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 NSMAFQ92636 917 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 HPS1Q92902 700 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 FAM162AQ96A26 154 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 HSH2DQ96JZ2 352 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 KCTD14Q9BQ13 255 aaPredicted RBP11.98□□□□□ -0.49
USP4-206ENST00000461553 NDEL1Q9GZM8 345 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 EFCAB1Q9HAE3 211 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 SIAEQ9HAT2 523 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 MAN2C1Q9NTJ4 1040 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 GMPR2Q9P2T1 348 aaKnown RBP11.98□□□□□ -0.49
USP4-206ENST00000461553 RHCGQ9UBD6 479 aa11.98□□□□□ -0.49
USP4-206ENST00000461553 TRAV27A0A087WT01 109 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 RNF212BA8MTL3 300 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 EFCAB9A8MZ26 197 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 J3KTA2 159 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 SERPINA1P01009 418 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 TGFAP01135 160 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 MMP7P09237 267 aaPredicted RBP11.97□□□□□ -0.49
USP4-206ENST00000461553 TCN1P20061 433 aaPredicted RBP11.97□□□□□ -0.49
USP4-206ENST00000461553 ACHEP22303 614 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 CDAP32320 146 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 RAD52P43351 418 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 SLC9A3P48764 834 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 GSK3BP49841 420 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 SEC24CP53992 1094 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 CTXN1P60606 82 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 RIN1Q13671 783 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 LAPTM4AQ15012 233 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 ANKDD1AQ495B1 522 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 PABPC1L2AQ5JQF8 200 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 UGT2A3Q6UWM9 527 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 HACD2Q6Y1H2 254 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 ZNF730Q6ZMV8 503 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 CBLL1Q75N03 491 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 OAFQ86UD1 273 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 IGFN1Q86VF2 1251 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 CYP4Z1Q86W10 505 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 ARIH2OSQ8N7S6 290 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 SPATA3Q8NHX4 192 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 SYNPRQ8TBG9 265 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 ACOT11Q8WXI4 607 aaPredicted RBP11.97□□□□□ -0.49
USP4-206ENST00000461553 UGT2A1Q9Y4X1 527 aa11.97□□□□□ -0.49
USP4-206ENST00000461553 IGKV1D-43A0A0B4J1Z2 117 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 A6NIZ1 184 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 LYNX1G3V0Z9 82 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 LILRA1O75019 489 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 HPXP02790 462 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 MT-ND5P03915 603 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 LYNX1P0DP58 116 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 NAT2P11245 290 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 ZNF32P17041 273 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 MAKP20794 623 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 CCNOP22674 350 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 GUCA1AP43080 201 aaPredicted RBP11.96□□□□□ -0.49
USP4-206ENST00000461553 GPR4P46093 362 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 GPR6P46095 362 aaPredicted RBP11.96□□□□□ -0.49
USP4-206ENST00000461553 RAP1BP61224 184 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 RAP1AP62834 184 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 PRKCDQ05655 676 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 CCNIQ14094 377 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 TRIP10Q15642 601 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 SGCAQ16586 387 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 ALKBH6Q3KRA9 238 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 ELFN2Q5R3F8 820 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 FAM120AOSQ5T036 256 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 THEM4Q5T1C6 240 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 TMEM154Q6P9G4 183 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 UNQ6126/PRO20091Q6UXV3 157 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 IL17RELQ6ZVW7 336 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 RRM2BQ7LG56 351 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 MEX3DQ86XN8 651 aaKnown RBP11.96□□□□□ -0.49
USP4-206ENST00000461553 TREML1Q86YW5 311 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 RNF113BQ8IZP6 322 aaKnown RBP11.96□□□□□ -0.49
USP4-206ENST00000461553 OR13C2Q8NGS9 318 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 OR51A7Q8NH64 312 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 ZNF519Q8TB69 540 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 C11orf40Q8WZ69 217 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 RDH5Q92781 318 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 NABP1Q96AH0 204 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 NMD3Q96D46 503 aaKnown RBP11.96□□□□□ -0.49
USP4-206ENST00000461553 TSPAN32Q96QS1 320 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 RBP7Q96R05 134 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 NSRP1Q9H0G5 558 aaKnown RBP11.96□□□□□ -0.49
USP4-206ENST00000461553 SLCO1C1Q9NYB5 712 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 TAAR3PQ9P1P4 343 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 RPS6KA6Q9UK32 745 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 SNX13Q9Y5W8 968 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 WNK2Q9Y3S1 2297 aa11.96□□□□□ -0.49
USP4-206ENST00000461553 IGLV3-9A0A075B6K5 115 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 A0A1W2PPL8 197 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 PHF1O43189 567 aaPredicted RBP11.95□□□□□ -0.5
USP4-206ENST00000461553 NCR1O76036 304 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms