RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PLPPR1Q8TBJ4 325 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 CXorf40AQ8TE69 158 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 CREB3L1Q96BA8 519 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 CWH43Q9H720 699 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 COX16Q9P0S2 106 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 PSG8Q9UQ74 426 aa2.25□□□□□ -2.05
USP40-209ENST00000452724 ZNF705GA8MUZ8 300 aaPredicted RBP2.24□□□□□ -2.05
USP40-209ENST00000452724 SLC25A14O95258 325 aaPredicted RBP2.24□□□□□ -2.05
USP40-209ENST00000452724 RAB3DO95716 219 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 AIFM1O95831 613 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 ZNF286BP0CG31 522 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 IGHV1-8P0DP01 117 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 CSNK1A1P48729 337 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 YWHAGP61981 247 aaKnown RBP eCLIP2.24□□□□□ -2.05
USP40-209ENST00000452724 ECH1Q13011 328 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 DDX39BQ13838 428 aaKnown RBP2.24□□□□□ -2.05
USP40-209ENST00000452724 ANKRD22Q5VYY1 191 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 FBXW9Q5XUX1 488 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 TEX43Q6ZNM6 134 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 PDIK1LQ8N165 341 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 MS4A15Q8N5U1 240 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 NECAB1Q8N987 351 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 OR1S2Q8NGQ3 325 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 SYNPRQ8TBG9 265 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 PARP12Q9H0J9 701 aaKnown RBP2.24□□□□□ -2.05
USP40-209ENST00000452724 SIRT7Q9NRC8 400 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 NUP50Q9UKX7 468 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 ZNF835Q9Y2P0 537 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 ASB3Q9Y575 518 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 DOCK9Q9BZ29 2069 aa2.24□□□□□ -2.05
USP40-209ENST00000452724 CNTNAP1P78357 1384 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 IGHV5-10-1A0A0J9YXX1 117 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 SPECC1L-ADORA2AF8WAN1 911 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 EEDO75530 441 aaKnown RBP2.23□□□□□ -2.05
USP40-209ENST00000452724 KRTAP5-8O75690 187 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 HLA-DPB1P04440 258 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 BCHEP06276 602 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 SLC2A3P11169 496 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 MUC1P15941 1255 aaPredicted RBP2.23□□□□□ -2.05
USP40-209ENST00000452724 HNRNPH3P31942 346 aaKnown RBP2.23□□□□□ -2.05
USP40-209ENST00000452724 MAS1LP35410 378 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 SSR4P51571 173 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 ACTG2P63267 376 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 ARG2P78540 354 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 SYCNQ0VAF6 134 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 MAB21L1Q13394 359 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 LY6EQ16553 131 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 ZSCAN26Q16670 478 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 CCNJQ5T5M9 372 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 Q5W150 140 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 SPECC1LQ69YQ0 1117 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 KDELC1Q6UW63 502 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 ZNF836Q6ZNA1 936 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 RIMKLAQ8IXN7 391 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 OR9K2Q8NGE7 335 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 DEDD2Q8WXF8 326 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 TM4SF18Q96CE8 201 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 SLC25A2Q9BXI2 301 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 C12orf10Q9HB07 376 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 HMG20AQ9NP66 347 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 ZNF355PQ9NSJ1 428 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 ZNRD1Q9P1U0 126 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 LSM7Q9UK45 103 aaKnown RBP2.23□□□□□ -2.05
USP40-209ENST00000452724 ING4Q9UNL4 249 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 PCM1Q15154 2024 aa2.23□□□□□ -2.05
USP40-209ENST00000452724 SERPINE3A8MV23 424 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 SRP72O76094 671 aaKnown RBP2.22□□□□□ -2.05
USP40-209ENST00000452724 VAMP5O95183 116 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 NDUFB10O96000 172 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 CST1P01037 141 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 ADRA2AP08913 450 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 NPY1RP25929 384 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 TAGLN2P37802 199 aaKnown RBP2.22□□□□□ -2.05
USP40-209ENST00000452724 CEACAM6P40199 344 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 CCNHP51946 323 aaPredicted RBP2.22□□□□□ -2.05
USP40-209ENST00000452724 KRTAP10-10P60014 251 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 ESRRGP62508 458 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 SSX2Q16385 188 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 RABL6Q3YEC7 729 aaPredicted RBP2.22□□□□□ -2.05
USP40-209ENST00000452724 CEP55Q53EZ4 464 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 ANKRD26P1Q6NSI1 321 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 DNAJC24Q6P3W2 148 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 NIPA1Q7RTP0 329 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 UBALD2Q8IYN6 164 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 LIX1Q8N485 282 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 RNF182Q8N6D2 247 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 ZNF615Q8N8J6 731 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 ZNF709Q8N972 641 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 SPATA4Q8NEY3 305 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 NOXO1Q8NFA2 376 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 B3GNT7Q8NFL0 401 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 GPR151Q8TDV0 419 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 ABHD3Q8WU67 409 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 ZNF606Q8WXB4 792 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 FBXO32Q969P5 355 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 SERPINB12Q96P63 405 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 CTRCQ99895 268 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 METTL7AQ9H8H3 244 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 KCNJ16Q9NPI9 418 aa2.22□□□□□ -2.05
USP40-209ENST00000452724 SLC2A8Q9NY64 477 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms