RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MRPS12O15235 138 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CD5LO43866 347 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CA11O75493 328 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CLPXO76031 633 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 UTS2O95399 124 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 IGLV2-23P01705 113 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SERPINA5P05154 406 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 RRM2P31350 389 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CXCL5P42830 114 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SSR4P51571 173 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 RGS8P57771 180 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 LINC00315P59091 139 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CLINT1Q14677 625 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 KCTD19Q17RG1 926 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 PIGGQ5H8A4 983 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 C9orf135Q5VTT2 229 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SPECC1LQ69YQ0 1117 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 REEP3Q6NUK4 255 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM179Q6ZVK1 233 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SLC16A14Q7RTX9 510 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 MREGQ8N565 214 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 MDS2Q8NDY4 140 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 OR4A4PQ8NGN8 299 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 ACTRT1Q8TDG2 376 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 MCUR1Q96AQ8 359 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 PIK3IP1Q96FE7 263 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 DUS3LQ96G46 650 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 OR5B12Q96R08 314 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 P2RX4Q99571 388 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SH3GL3Q99963 347 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 ANP32EQ9BTT0 268 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 GEMIN7Q9H840 131 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 DMAP1Q9NPF5 467 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 GCNT4Q9P109 453 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 STOX2Q9P2F5 926 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 RABL2AQ9UBK7 228 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 UXTQ9UBK9 157 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 GOLT1BQ9Y3E0 138 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 ARHGAP21Q5T5U3 1957 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 A0A0B4J2A0 478 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 IGHV3-64DA0A0J9YX35 117 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 GLYATL1P3A0A0U1RQE8 302 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SERTM2A0A1B0GWG4 89 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PLAC8L1A1L4L8 177 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 DPM1O60762 260 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SS18L1O75177 396 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 AIFM1O95831 613 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 C6orf47O95873 294 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 BGLAPP02818 100 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ACSM4P0C7M7 580 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 GALP22466 123 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 GTF2E2P29084 291 aaKnown RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 HOXA9P31269 272 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 HRH1P35367 487 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 AQP2P41181 271 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TNNT2P45379 298 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ATP5OP48047 213 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 RPS15P62841 145 aaKnown RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 HMGCS1Q01581 520 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PAX5Q02548 391 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TWF1Q12792 350 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 MERTKQ12866 999 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 EBI3Q14213 229 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PON3Q15166 354 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TTLL9Q3SXZ7 439 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TFDP3Q5H9I0 405 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 CCNJQ5T5M9 372 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 EIF3MQ7L2H7 374 aaKnown RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 CENPQQ7L2Z9 268 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PEX26Q7Z412 305 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 CMTM1Q8IZ96 169 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PRELID2Q8N945 189 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 OR4C5Q8NGB2 326 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 OR10R2Q8NGX6 335 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 GIMAP1Q8WWP7 306 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 FAM3DQ96BQ1 224 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SERPINB12Q96P63 405 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TSSK3Q96PN8 268 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 BPIFA3Q9BQP9 254 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 PLA2G2FQ9BZM2 168 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SHPKQ9UHJ6 478 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF223Q9UK11 482 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TMED5Q9Y3A6 229 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 CENPJQ9HC77 1338 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TRAV39A0A0B4J263 110 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 TMX2-CTNND1H3BSU7 103 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SIRPB1O00241 398 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 KLHL41O60662 606 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 GNAO1P09471 354 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ZDHHC11BP0C7U3 371 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SMIM10L1P0DMW3 83 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 DCKP27707 260 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 OTX1P32242 354 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-206ENST00000376646 FOXN2P32314 431 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 MAS1LP35410 378 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SLC1A1P43005 524 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF136P52737 540 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 RAB10P61026 200 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SLC7A9P82251 487 aa1.32□□□□□ -2.2
VPS13A-206ENST00000376646 SLC25A11Q02978 314 aaKnown RBP1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms