RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KIF20BQ96Q89 1820 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 TRAV34A0A0B4J273 112 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZC3H12DA2A288 527 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR6C76A6NM76 312 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF99A8MXY4 864 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 B4E171 279 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 KLRC4O43908 158 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 C6orf47O95873 294 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SPATA31C1P0DKV0 1188 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PYCR1P32322 319 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 TAS1R1Q7RTX1 841 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PIGZQ86VD9 579 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 FRMD1Q8N878 549 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZFAND2BQ8WV99 257 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 CIB3Q96Q77 187 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SLC7A10Q9NS82 523 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 FER1L6Q2WGJ9 1857 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PLCE1Q9P212 2302 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 A8MWL6 223 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SPRY3O43610 288 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FOXD2O60548 495 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SEMA4FO95754 770 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SLC25A5P05141 298 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 COX6CP09669 75 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 GZMBP10144 247 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HAPLN1P10915 354 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ATP1B2P14415 290 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CD1EP15812 388 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HOXD9P28356 352 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF93P35789 620 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NKX2-5P52952 324 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CEACAM7Q14002 265 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CIRBPQ14011 172 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CD226Q15762 336 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 TCTE1Q5JU00 501 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 VAX1Q5SQQ9 334 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HES3Q5TGS1 186 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ADGRA1Q86SQ6 560 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 THOC6Q86W42 341 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 DNAJC5GQ8N7S2 189 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR6S1Q8NH40 331 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PLD4Q96BZ4 506 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 VN1R3Q9BXE9 311 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PRDM12Q9H4Q4 367 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NAA60Q9H7X0 242 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PRDM15P57071 1507 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SEMG1P04279 462 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FAM157BP0CG42 384 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FCARP24071 287 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 IMPA1P29218 277 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PNLIPRP2P54317 469 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NXPH1P58417 271 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ILKQ13418 452 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ELAVL3Q14576 367 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 TSSK4Q6SA08 328 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF793Q6ZN11 406 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 STRADAQ7RTN6 431 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM252Q8N6L7 170 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR51A4Q8NGJ6 313 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR51A2Q8NGJ7 313 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CLSTN3Q9BQT9 956 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NRSN2Q9GZP1 204 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CBY1Q9Y3M2 126 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SPATA31A1Q5TZJ5 1347 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 C17orf105B2RV13 164 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SIGLEC6O43699 453 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NPPAP01160 153 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PDGFAP04085 211 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 MELTFP08582 738 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ANKRD34CP0C6C1 535 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ACSM4P0C7M7 580 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CLDN17P56750 224 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RBM11P57052 281 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 B2MP61769 119 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HIST1H3AP68431 136 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RELQ04864 619 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SNTB2Q13425 540 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 DUSP7Q16829 419 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 LGALSLQ3ZCW2 172 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RPL13AP3Q6NVV1 102 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF343Q6P1L6 599 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CLEC9AQ6UXN8 241 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 GAREM2Q75VX8 874 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FBXL16Q8N461 479 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ACVR1CQ8NER5 493 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR4F17Q8NGA8 305 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR5D18Q8NGL1 313 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ART4Q93070 314 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RPEQ96AT9 228 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 LYSMD1Q96S90 227 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SEZ6LQ9BYH1 1024 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SIRT7Q9NRC8 400 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 VSIG4Q9Y279 399 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CEP250Q9BV73 2442 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 GLI2P10070 1586 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 F5H5P2 479 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 GPR171O14626 319 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PRKNO60260 465 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 KLF7O75840 302 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 MMP2P08253 660 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms