RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 NKX6-1P78426 367 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-201ENST00000332345 PLP2Q04941 152 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 FMODQ06828 376 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 PPP1R8Q12972 351 aaKnown RBP12.17□□□□□ -0.46
LIMS1-201ENST00000332345 KRR1Q13601 381 aaKnown RBP12.17□□□□□ -0.46
LIMS1-201ENST00000332345 FAM27BQ5VT28 67 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 SHEQ5VZ18 495 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 ZNF770Q6IQ21 691 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-201ENST00000332345 CCDC121Q6ZUS5 278 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 ADCK1Q86TW2 530 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 MUC15Q8N387 334 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 LRRC18Q8N456 261 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 CLDN22Q8N7P3 220 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 OR9Q2Q8NGE9 314 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 IGFBPL1Q8WX77 278 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 GTPBP3Q969Y2 492 aaKnown RBP12.17□□□□□ -0.46
LIMS1-201ENST00000332345 TRMT61AQ96FX7 289 aaKnown RBP12.17□□□□□ -0.46
LIMS1-201ENST00000332345 SAMD8Q96LT4 415 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 ERMAPQ96PL5 475 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-201ENST00000332345 IFT27Q9BW83 186 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 GSX2Q9BZM3 304 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 ZNF224Q9NZL3 707 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 SPEF1Q9Y4P9 236 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 UGT2A1Q9Y4X1 527 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 USF3Q68DE3 2245 aa12.17□□□□□ -0.46
LIMS1-201ENST00000332345 MAP1AP78559 2803 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-201ENST00000332345 IGKV1D-43A0A0B4J1Z2 117 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 IGHV2OR16-5A0A0B4J2B6 119 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 OVOL3O00110 214 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 SOCS2O14508 198 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 ARPC3O15145 178 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 CD8AP01732 235 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 SERPINA5P05154 406 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 CELA3BP08861 270 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 PATE4P0C8F1 98 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 GSTM3P21266 225 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 PCBD1P61457 104 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 COX10Q12887 443 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 RAB39AQ14964 217 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 MESTQ5EB52 335 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 DTX2Q86UW9 622 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 AQP11Q8NBQ7 271 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 PAPD5Q8NDF8 572 aaKnown RBP12.16□□□□□ -0.46
LIMS1-201ENST00000332345 OR52L1Q8NGH7 329 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 FGFBP3Q8TAT2 258 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 GIPC3Q8TF64 312 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 RASD2Q96D21 266 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 ZNF75AQ96N20 296 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 TRAF4Q9BUZ4 470 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-201ENST00000332345 DGCR6LQ9BY27 220 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 LRMDAQ9H2I8 198 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 C1orf198Q9H425 327 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 CCNB1IP1Q9NPC3 277 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 CBLN4Q9NTU7 201 aa12.16□□□□□ -0.46
LIMS1-201ENST00000332345 ZNF701Q9NV72 531 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-201ENST00000332345 VSX1Q9NZR4 365 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-201ENST00000332345 VPS13CQ709C8 3753 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 IQCMA0A1B0GVH7 501 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 A0A1W2PPL8 197 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 H7C1C5 153 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 EBAG9O00559 213 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 SLC16A7O60669 478 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 PPP1R3DO95685 299 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 CRABP1P29762 137 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 CALCRP30988 508 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 PTH2RP49190 550 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 ARHGDIAP52565 204 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 LCN6P62502 163 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 CBX1P83916 185 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 DNM1P34Q6PK57 102 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 PRSS57Q6UWY2 283 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 B3GLCTQ6Y288 498 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 ZNF620Q6ZNG0 422 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 RASSF6Q6ZTQ3 369 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 JAZF1Q86VZ6 243 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 NUP37Q8NFH4 326 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 OR1J2Q8NGS2 313 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 HTRA1Q92743 480 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 NABP1Q96AH0 204 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 PERPQ96FX8 193 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 WACQ9BTA9 647 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 NOX3Q9HBY0 568 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 CA10Q9NS85 328 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 VNN3Q9NY84 501 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 IL20Q9NYY1 176 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 DNAJB9Q9UBS3 223 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 CDH10Q9Y6N8 788 aa12.15□□□□□ -0.46
LIMS1-201ENST00000332345 RTTNQ86VV8 2226 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 ARRDC5A6NEK1 342 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 C12orf71A8MTZ7 269 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 FKBP6O75344 327 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 E2F6O75461 281 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 KHDRBS3O75525 346 aaKnown RBP12.14□□□□□ -0.47
LIMS1-201ENST00000332345 CIB2O75838 187 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 RENP00797 406 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 CST2P09228 141 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 ZNF35P13682 527 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 MSR1P21757 451 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 NR4A1P22736 598 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 LAP3P28838 519 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms