RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 OR10AC1Q8NH08 325 aa14.69□□□□□ -0.06
USP4-201ENST00000265560 OTOSQ8NHW6 89 aa14.69□□□□□ -0.06
USP4-201ENST00000265560 OXGR1Q96P68 337 aa14.69□□□□□ -0.06
USP4-201ENST00000265560 DEFB127Q9H1M4 99 aa14.69□□□□□ -0.06
USP4-201ENST00000265560 ELOVL3Q9HB03 270 aa14.69□□□□□ -0.06
USP4-201ENST00000265560 KIAA1549Q9HCM3 1950 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 ACOD1A6NK06 481 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 ZNF726A6NNF4 738 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 H3F3AP84243 136 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 CAMK2BQ13554 666 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 PHYHD1Q5SRE7 291 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 LAX1Q8IWV1 398 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 OR6S1Q8NH40 331 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 FAM173AQ9BQD7 235 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 CENPMQ9NSP4 180 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 FBXL3Q9UKT7 428 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 BOKQ9UMX3 212 aaPredicted RBP14.68□□□□□ -0.06
USP4-201ENST00000265560 KRT8P05787 483 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 SOX2P48431 317 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 SELENOPP49908 381 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 RORCP51449 518 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 FOXC1Q12948 553 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 DYNC1I2Q13409 638 aaKnown RBP14.68□□□□□ -0.06
USP4-201ENST00000265560 GDPGP1Q6ZNW5 385 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 OR10D3Q8NH80 312 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 ZNF837Q96EG3 531 aaPredicted RBP14.68□□□□□ -0.06
USP4-201ENST00000265560 RBP7Q96R05 134 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 ABHD6Q9BV23 337 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 AKIP1Q9NQ31 210 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 KLK13Q9UKR3 277 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 TRAPPC4Q9Y296 219 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 A6NIZ1 184 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 CLDN25C9JDP6 229 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 SMAD9O15198 467 aaKnown RBP14.68□□□□□ -0.06
USP4-201ENST00000265560 RGS9O75916 674 aaPredicted RBP14.68□□□□□ -0.06
USP4-201ENST00000265560 QDPRP09417 244 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 CRABP1P29762 137 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 MEOX1P50221 254 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 RAP1BP61224 184 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 RAP1AP62834 184 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 CLN3Q13286 438 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 ZNF684Q5T5D7 378 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 LRFN4Q6PJG9 635 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 DCXRQ7Z4W1 244 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 TMEM251Q8N6I4 163 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 OR51A4Q8NGJ6 313 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 SLC25A44Q96H78 314 aaPredicted RBP14.68□□□□□ -0.06
USP4-201ENST00000265560 DACH2Q96NX9 599 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 ZNF703Q9H7S9 590 aaPredicted RBP14.68□□□□□ -0.06
USP4-201ENST00000265560 FRRS1LQ9P0K9 344 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 COMMD3Q9UBI1 195 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 SLC22A13Q9Y226 551 aa14.68□□□□□ -0.06
USP4-201ENST00000265560 A0A1W2PNV4 684 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 OR5H15A6NDH6 313 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 NPIPA2E9PIF3 369 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 NPIPA3F8WFD2 350 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 UPK3AO75631 287 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 IGHV3-9P01782 118 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 SP1P08047 785 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 PGA4P0DJD7 388 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 PGA3P0DJD8 388 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 ZNF823P16415 610 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 ZNF829Q3KNS6 432 aaPredicted RBP14.67□□□□□ -0.06
USP4-201ENST00000265560 RNFT1Q5M7Z0 435 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 MFSD4AQ8N468 514 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 SLC26A10Q8NG04 563 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 SLC25A46Q96AG3 418 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 IP6K3Q96PC2 410 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 MRPL13Q9BYD1 178 aaKnown RBP14.67□□□□□ -0.06
USP4-201ENST00000265560 MMP27Q9H306 513 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 PLGRKTQ9HBL7 147 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 PLEKHB1Q9UF11 243 aaPredicted RBP14.67□□□□□ -0.06
USP4-201ENST00000265560 CDV3Q9UKY7 258 aaKnown RBP14.67□□□□□ -0.06
USP4-201ENST00000265560 EFSO43281 561 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 PMS2P2O95744 297 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 PNPP00491 289 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 HSF2Q03933 536 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 FAM220AQ7Z4H9 259 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 SYS1Q8N2H4 156 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 ABHD3Q8WU67 409 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 C11orf40Q8WZ69 217 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 MCHR2Q969V1 340 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 SMIM19Q96E16 107 aa14.67□□□□□ -0.06
USP4-201ENST00000265560 TLN1Q9Y490 2541 aaKnown RBP14.66□□□□□ -0.06
USP4-201ENST00000265560 IGHG1P01857 330 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 RPS11P62280 158 aaKnown RBP eCLIP14.66□□□□□ -0.06
USP4-201ENST00000265560 SLC25A25Q6KCM7 469 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 CREB3L2Q70SY1 520 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 NKX3-1Q99801 234 aaPredicted RBP14.66□□□□□ -0.06
USP4-201ENST00000265560 SLC25A18Q9H1K4 315 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 B3GAT2Q9NPZ5 323 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 CLEC4AQ9UMR7 237 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 LIPGQ9Y5X9 500 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 ABHD16AO95870 558 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 CD82P27701 267 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 FGF9P31371 208 aaPredicted RBP14.66□□□□□ -0.06
USP4-201ENST00000265560 S100A5P33763 92 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 KRT77Q7Z794 578 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 OR6N1Q8NGY5 312 aa14.66□□□□□ -0.06
USP4-201ENST00000265560 RGP1Q92546 391 aaPredicted RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms