RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 A0A096LPE4 126 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 A0A1W2PPZ6 126 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 TSPAN15O95858 294 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 AMY2BP19961 511 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 TAS2R30P59541 319 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 ACTBP60709 375 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 PPP1CAP62136 330 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 RPS26P62854 115 aaKnown RBP4.59□□□□□ -1.67
SCN1A-218ENST00000640036 GK3PQ14409 553 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 FAM69AQ5T7M9 428 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 SYT6Q5T7P8 510 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-218ENST00000640036 GLCCI1Q86VQ1 547 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 CNTN4Q8IWV2 1026 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 PLD6Q8N2A8 252 aaKnown RBP4.59□□□□□ -1.67
SCN1A-218ENST00000640036 CSNK2A3Q8NEV1 391 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 OR2Z1Q8NG97 314 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 CD200R1Q8TD46 325 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 CNN2Q99439 309 aaKnown RBP4.59□□□□□ -1.67
SCN1A-218ENST00000640036 HEXA-AS1Q9H8Q6 139 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 SLC52A3Q9NQ40 469 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 ARMC1Q9NVT9 282 aa4.59□□□□□ -1.67
SCN1A-218ENST00000640036 ZCWPW2A0A1B0GU75 182 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 C5orf49A4QMS7 147 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 LRP5LA4QPB2 252 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 GABARAPH6UMI1 98 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 GABARAPO95166 117 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 HOXD13P35453 343 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 RBMXP38159 391 aaKnown RBP4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SOX2P48431 317 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 ASCL1P50553 236 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 PRRX1P54821 245 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 CATR1Q13166 79 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 TAF9Q16594 264 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 ANKRD16Q6P6B7 361 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 ZNF367Q7RTV3 350 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 DPY19L4Q7Z388 723 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 LSRQ86X29 649 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-218ENST00000640036 ZNF740Q8NDX6 193 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SEMA6DQ8NFY4 1073 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 OR5M1Q8NGP8 315 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 OR4K13Q8NH42 304 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 MAELQ96JY0 434 aaKnown RBP4.59□□□□□ -1.68
SCN1A-218ENST00000640036 ADGRG7Q96K78 797 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 OR7D2Q96RA2 312 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 WWTR1Q9GZV5 400 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SEMA6AQ9H2E6 1030 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 GLTPQ9NZD2 209 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SERGEFQ9UGK8 458 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SLC7A8Q9UHI5 535 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 LAMP3Q9UQV4 416 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 POMT1Q9Y6A1 747 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 TEX264Q9Y6I9 313 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 NCKAP5O14513 1909 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 MYO5AQ9Y4I1 1855 aaKnown RBP4.59□□□□□ -1.68
SCN1A-218ENST00000640036 TRAV38-1A0A0B4J264 116 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 FAAHO00519 579 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 RAP2AP10114 183 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 ETS2P15036 469 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 AREGP15514 252 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 PEX2P28328 305 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 LTBRP36941 435 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SUMO3P55854 103 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-218ENST00000640036 RAC1P63000 192 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SNTB1Q13884 538 aaKnown RBP4.59□□□□□ -1.68
SCN1A-218ENST00000640036 PIGGQ5H8A4 983 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 RFLNAQ6ZTI6 216 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SPPL2CQ8IUH8 684 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 TP53I13Q8NBR0 393 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-218ENST00000640036 BHLHE23Q8NDY6 225 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 OR13C9Q8NGT0 318 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 AGAP11Q8TF27 550 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 TMEM19Q96HH6 336 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 GPA33Q99795 319 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 CHRDL1Q9BU40 450 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 SEMA4CQ9C0C4 833 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 TPK1Q9H3S4 243 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 TAAR3PQ9P1P4 343 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 RNF6Q9Y252 685 aa4.59□□□□□ -1.68
SCN1A-218ENST00000640036 ZFC3H1O60293 1989 aaKnown RBP4.59□□□□□ -1.68
SCN1A-218ENST00000640036 XKRY2A2RUG3 117 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 FAM159BA6NKW6 160 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 AURKAO14965 403 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 AKR1C4P17516 323 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 RHCEP18577 417 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 IMPA1P29218 277 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 C6orf136Q5SQH8 315 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 GPR107Q5VW38 600 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 AWAT2Q6E213 333 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 OR2T5Q6IEZ7 315 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 KIF2BQ8N4N8 673 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 OR2T29Q8NH02 315 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 IL4I1Q96RQ9 567 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 ITPAQ9BY32 194 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 POLR2J2Q9GZM3 115 aaKnown RBP4.58□□□□□ -1.68
SCN1A-218ENST00000640036 RIMS3Q9UJD0 308 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 A0A0D9SG52 128 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 CLDN24A6NM45 220 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 TLX2O43763 284 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-218ENST00000640036 GPR137BO60478 399 aa4.58□□□□□ -1.68
SCN1A-218ENST00000640036 UCHL1P09936 223 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms