RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SNNO75324 88 aaPredicted RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 NEBLO76041 1014 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 NDUFB10O96000 172 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 PAHP00439 452 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 IQCF3P0C7M6 154 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 NEFHP12036 1026 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 NPR2P20594 1047 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 SLC2A5P22732 501 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 IL12AP29459 219 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 CA8P35219 290 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 BMI1P35226 326 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 DEKP35659 375 aaKnown RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 P2RY1P47900 373 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 ARRB1P49407 418 aaPredicted RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 PRMT2P55345 433 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 CARD18P57730 90 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 KLRC3Q07444 240 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 STK38Q15208 465 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 MICBQ29980 383 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 SLC25A52Q3SY17 297 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 PARP15Q460N3 678 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 TTC23Q5W5X9 447 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 BZW1Q7L1Q6 419 aaKnown RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 LUZP2Q86TE4 346 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 CALHM3Q86XJ0 350 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 TGIF2LXQ8IUE1 241 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 UBALD2Q8IYN6 164 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 COMMD1Q8N668 190 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 ZNF321PQ8N8H1 164 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 OR4D9Q8NGE8 314 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 OR4D5Q8NGN0 318 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 OR1F12Q8NHA8 337 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 OSTF1Q92882 214 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 FGF11Q92914 225 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 NT5C3BQ969T7 300 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 CXorf40BQ96DE9 158 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 TM4SF19Q96DZ7 209 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 NRBF2Q96F24 287 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 PAGE5Q96GU1 130 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 BMFQ96LC9 184 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 CHP1Q99653 195 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 BCL7BQ9BQE9 202 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 C11orf70Q9BRQ4 267 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 NUP58Q9BVL2 599 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 GON7Q9BXV9 100 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 ACTR6Q9GZN1 396 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 REEP4Q9H6H4 257 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 METTL7AQ9H8H3 244 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 NEK6Q9HC98 313 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 ZFP14Q9HCL3 533 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 MRPL22Q9NWU5 206 aaKnown RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 SLC2A8Q9NY64 477 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 KCNIP1Q9NZI2 227 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 CHRNA9Q9UGM1 479 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 SUN2Q9UH99 717 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 CDH9Q9ULB4 789 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 AK6Q9Y3D8 172 aaKnown RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 RPL36Q9Y3U8 105 aaKnown RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 COMMD3-BMI1R4GMX3 469 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 PNPLA6Q8IY17 1366 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 TNIKQ9UKE5 1360 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 COL6A3P12111 3177 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 SMCO3A2RU48 225 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ARHGEF35A5YM69 484 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 METTL21EPA6NDL7 271 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 CCDC182A6NF36 153 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 OR52A4PA6NMU1 304 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ZNF879B4DU55 563 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 BTN3A3O00478 584 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 LSM1O15116 133 aaKnown RBP1.71□□□□□ -2.14
CD44-239ENST00000639002 NMT2O60551 498 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 DNAJB6O75190 326 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ATP5LO75964 103 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 OXSR1O95747 527 aaPredicted RBP1.71□□□□□ -2.14
CD44-239ENST00000639002 OTCP00480 354 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 NPPAP01160 153 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 PRKACAP17612 351 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 TNNI1P19237 187 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 EIF2S2P20042 333 aaKnown RBP1.71□□□□□ -2.14
CD44-239ENST00000639002 SLC26A3P40879 764 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 GRIA1P42261 906 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 CDH4P55283 916 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 RGS8P57771 180 aaPredicted RBP1.71□□□□□ -2.14
CD44-239ENST00000639002 EIF3EP60228 445 aaKnown RBP1.71□□□□□ -2.14
CD44-239ENST00000639002 TGM3Q08188 693 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ATP6AP1Q15904 470 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 SLC15A2Q16348 729 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 DMRTC1Q5HYR2 192 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 CCDC122Q5T0U0 273 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 RAET1LQ5VY80 246 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ERICH5Q6P6B1 374 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 EIF3MQ7L2H7 374 aaKnown RBP1.71□□□□□ -2.14
CD44-239ENST00000639002 BIVMQ86UB2 503 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 PLA2G4DQ86XP0 818 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ECHDC2Q86YB7 292 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 TMEM123Q8N131 208 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ANKFN1Q8N957 763 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 FNDC5Q8NAU1 212 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 BPIFCQ8NFQ6 507 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 OR4K14Q8NGD5 310 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms