RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PGA4P0DJD7 388 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 PGA3P0DJD8 388 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 IFI30P13284 250 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 HGFACQ04756 655 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 ZNF813Q6ZN06 617 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 MEX3DQ86XN8 651 aaKnown RBP16.69■□□□□ 0.26
CLN3-260ENST00000637578 RNF113BQ8IZP6 322 aaKnown RBP16.69■□□□□ 0.26
CLN3-260ENST00000637578 NUP37Q8NFH4 326 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 OR4F15Q8NGB8 312 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 OR4K5Q8NGD3 323 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 BPIFA2Q96DR5 249 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 MRPL13Q9BYD1 178 aaKnown RBP16.69■□□□□ 0.26
CLN3-260ENST00000637578 DENND2DQ9H6A0 471 aaPredicted RBP16.69■□□□□ 0.26
CLN3-260ENST00000637578 CA10Q9NS85 328 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 CSPG4Q6UVK1 2322 aa16.69■□□□□ 0.26
CLN3-260ENST00000637578 SH3PXD2BA1X283 911 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 KRT36O76013 467 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 BCL10O95999 233 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 CST1P01037 141 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 HLA-HP01893 362 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 LIMS1P48059 325 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 IDH3GP51553 393 aaPredicted RBP16.68■□□□□ 0.26
CLN3-260ENST00000637578 PPP1R8Q12972 351 aaKnown RBP16.68■□□□□ 0.26
CLN3-260ENST00000637578 RRM2BQ7LG56 351 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 IL17RDQ8NFM7 739 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 DUS3LQ96G46 650 aaKnown RBP16.68■□□□□ 0.26
CLN3-260ENST00000637578 YY1AP1Q9H869 796 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 IGHV2OR16-5A0A0B4J2B6 119 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 NPIPB13A6NJU9 1138 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 CENPBD1B2RD01 187 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 NPIPB4C9JG80 1138 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 TNFRSF11BO00300 401 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 TIPRLO75663 272 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 BMP4P12644 408 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 B4GALT1P15291 398 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 MAKP20794 623 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 SERPINF1P36955 418 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 AQP2P41181 271 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 HMGA2P52926 109 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 PRKCDQ05655 676 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 RUNX1T1Q06455 604 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 MELKQ14680 651 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 RAB35Q15286 201 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 KRTAP21-3Q3LHN1 58 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 Q71RC1 249 aaPredicted RBP16.68■□□□□ 0.26
CLN3-260ENST00000637578 OR4C15Q8NGM1 316 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 REG4Q9BYZ8 158 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 NOX3Q9HBY0 568 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 SAMHD1Q9Y3Z3 626 aaKnown RBP16.68■□□□□ 0.26
CLN3-260ENST00000637578 AP4S1Q9Y587 144 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 U3KQV3 271 aa16.68■□□□□ 0.26
CLN3-260ENST00000637578 NSD1Q96L73 2696 aaPredicted RBP16.67■□□□□ 0.26
CLN3-260ENST00000637578 A0A1W2PRG6 482 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 F13BP05160 661 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 ZNF14P17017 642 aaPredicted RBP16.67■□□□□ 0.26
CLN3-260ENST00000637578 GPR4P46093 362 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 ZNF133P52736 654 aaPredicted RBP16.67■□□□□ 0.26
CLN3-260ENST00000637578 EFNB3Q15768 340 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 ADIPOQQ15848 244 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 GSG1Q2KHT4 349 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 ARMC4Q5T2S8 1044 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 OR10H5Q8NGA6 315 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 MOSPD2Q8NHP6 518 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 ASB10Q8WXI3 467 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 ZNF442Q9H7R0 627 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 REEP1Q9H902 201 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 INIPQ9NRY2 104 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 ARMC1Q9NVT9 282 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 TMCC3Q9ULS5 477 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 HIF3AQ9Y2N7 669 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 PMF1-BGLAPU3KQ54 211 aa16.67■□□□□ 0.26
CLN3-260ENST00000637578 RNF223E7ERA6 249 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 DHHO43323 396 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 SSX4O60224 188 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 IGHG1P01857 330 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 CAPZA2P47755 286 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 NPRL3Q12980 569 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 LAPTM4AQ15012 233 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 SKA3Q8IX90 412 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 PYDC1Q8WXC3 89 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 FAM46AQ96IP4 442 aaKnown RBP16.66■□□□□ 0.26
CLN3-260ENST00000637578 TMEM38BQ9NVV0 291 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 TMEM5Q9Y2B1 443 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 ARFGEF3Q5TH69 2177 aa16.66■□□□□ 0.26
CLN3-260ENST00000637578 B9A039 149 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 CDC42EP2O14613 210 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 QDPRP09417 244 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 OR4A8P0C604 315 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 SAGP10523 405 aaPredicted RBP16.65■□□□□ 0.26
CLN3-260ENST00000637578 CD79AP11912 226 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 ZNF35P13682 527 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 ACADSP16219 412 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 OMPP47874 163 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 DAP3P51398 398 aaKnown RBP16.65■□□□□ 0.26
CLN3-260ENST00000637578 NUDT6P53370 316 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 DSCR9P59020 149 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 KRTAP1-1Q07627 177 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 FHL1Q13642 323 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 NRN1LQ496H8 165 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 HDDC2Q7Z4H3 204 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms