RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PHYHIPQ92561 330 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 TMEM45BQ96B21 275 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 C4orf36Q96KX1 117 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 TIMP4Q99727 224 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 MED18Q9BUE0 208 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 SCNM1Q9BWG6 230 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 CXorf56Q9H5V9 222 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 RNF122Q9H9V4 155 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 GP6Q9HCN6 339 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 EMC3Q9P0I2 261 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 LAMP5Q9UJQ1 280 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 ZMIZ1Q9ULJ6 1067 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 GSTK1Q9Y2Q3 226 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 DNAJC13O75165 2243 aa9.43□□□□□ -0.9
CLN3-248ENST00000636355 CEP295Q9C0D2 2601 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ALPK2Q86TB3 2170 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 TRDV1A0A1B0GX56 115 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 OR6C65A6NJZ3 312 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 A6NL46 340 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ZNF726A6NNF4 738 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 KLK10O43240 276 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 CYTIPO60759 359 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ABHD16AO95870 558 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 SERPINA3P01011 423 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 IGHG3P01860 377 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 KRT8P05787 483 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ADRB1P08588 477 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 FCGR2AP12318 317 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ZNF24P17028 368 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ALOX5APP20292 161 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 TCEA1P23193 301 aaKnown RBP9.42□□□□□ -0.9
CLN3-248ENST00000636355 CRYBB2P43320 205 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 CD97P48960 835 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 CCL11P51671 97 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 CLDN18P56856 261 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 CLDN20P56880 219 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 SRSF6Q13247 344 aaKnown RBP9.42□□□□□ -0.9
CLN3-248ENST00000636355 SPCS2Q15005 226 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 CDK5R1Q15078 307 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 KCNMB1Q16558 191 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 DGUOKQ16854 277 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 DEFB109BQ30KR1 87 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 RIPPLY2Q5TAB7 128 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 DMKNQ6E0U4 476 aaPredicted RBP9.42□□□□□ -0.9
CLN3-248ENST00000636355 SLC18B1Q6NT16 456 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ZNF544Q6NX49 715 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 RPL22L1Q6P5R6 122 aaKnown RBP9.42□□□□□ -0.9
CLN3-248ENST00000636355 KCTD18Q6PI47 426 aaPredicted RBP9.42□□□□□ -0.9
CLN3-248ENST00000636355 DEGS2Q6QHC5 323 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 FOXL2NBQ6ZUU3 175 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 CREB3L2Q70SY1 520 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 TMEM123Q8N131 208 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ZADH2Q8N4Q0 377 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 OR51L1Q8NGJ5 315 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 OR6N2Q8NGY6 317 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 RNF128Q8TEB7 428 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 ZFAND2BQ8WV99 257 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 GATAD2BQ8WXI9 593 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 SMIM19Q96E16 107 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 PELI1Q96FA3 418 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 TSSK2Q96PF2 358 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 HES7Q9BYE0 225 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 SRXN1Q9BYN0 137 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 DCSTAMPQ9H295 470 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 MED29Q9NX70 200 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 PLA2G3Q9NZ20 509 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 MCTS1Q9ULC4 181 aaKnown RBP9.42□□□□□ -0.9
CLN3-248ENST00000636355 SF3B6Q9Y3B4 125 aaKnown RBP9.42□□□□□ -0.9
CLN3-248ENST00000636355 FREM2Q5SZK8 3169 aa9.42□□□□□ -0.9
CLN3-248ENST00000636355 SLC35F4A4IF30 521 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNF716A6NP11 495 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNF814B7Z6K7 855 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 OGG1O15527 345 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 TMCC2O75069 709 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNF254O75437 659 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 RGS9O75916 674 aaPredicted RBP9.41□□□□□ -0.9
CLN3-248ENST00000636355 CLPXO76031 633 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNF432O94892 652 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 F10P00742 488 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 IL1AP01583 271 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 HLA-DQA2P01906 255 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 CPN1P15169 458 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNF182P17025 639 aaPredicted RBP9.41□□□□□ -0.9
CLN3-248ENST00000636355 CELP19835 753 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 SOX6P35712 828 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 CSNK1A1P48729 337 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 VBP1P61758 197 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 NCS1P62166 190 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 SIRPAP78324 504 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ADAM8P78325 824 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 RUNX1T1Q06455 604 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 DOC2BQ14184 412 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 SLC10A1Q14973 349 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 RNPS1Q15287 305 aaKnown RBP9.41□□□□□ -0.9
CLN3-248ENST00000636355 VASNQ6EMK4 673 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 FDX2Q6P4F2 183 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 PAMR1Q6UXH9 720 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 B3GLCTQ6Y288 498 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 FCRLAQ7L513 359 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 LSRQ86X29 649 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms