RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CBR1P16152 277 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 HIST1H1CP16403 213 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 CTLA4P16410 223 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 SDHAP31040 664 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 UBE2NP61088 152 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 ACTR3P61158 418 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 RAP1BP61224 184 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 RAP1AP62834 184 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 CD47Q08722 323 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 KRR1Q13601 381 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 CLEC12AQ5QGZ9 265 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 SLC35F1Q5T1Q4 408 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 ADAM5Q6NVV9 412 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 OR4Q3Q8NH05 313 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 LRTOMTQ8WZ04 291 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 FOXN4Q96NZ1 517 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 TSSK2Q96PF2 358 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 DDOQ99489 341 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 DENND2DQ9H6A0 471 aaPredicted RBP12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 ESRP2Q9H6T0 727 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 OBP2BQ9NPH6 170 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 MGAT4BQ9UQ53 548 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 CDH10Q9Y6N8 788 aa12.37□□□□□ -0.43
SHKBP1-217ENST00000598558 H3BNX3 289 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 ABCD4O14678 606 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 ARPC3O15145 178 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 CIB2O75838 187 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 WNT11O96014 354 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 IGKV3-15P01624 115 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 CD3EP07766 207 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 CECR9P0C854 216 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 APEHP13798 732 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 CALCRP30988 508 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 SLC6A6P31641 620 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 NR1H2P55055 460 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 ATP6AP1Q15904 470 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 THEM4Q5T1C6 240 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 FAM205BPQ63HN1 556 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 GPR139Q6DWJ6 353 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 CD300LDQ6UXZ3 194 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 B3GLCTQ6Y288 498 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 FOXL2NBQ6ZUU3 175 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 HDDC2Q7Z4H3 204 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 OR4K13Q8NH42 304 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 PYDC1Q8WXC3 89 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 AKAP1Q92667 903 aaKnown RBP eCLIP12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 MS4A3Q96HJ5 214 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 SLC38A2Q96QD8 506 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 RBP7Q96R05 134 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 IFT27Q9BW83 186 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 YY1AP1Q9H869 796 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 UBTD1Q9HAC8 227 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 SMURF2Q9HAU4 748 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 NGBQ9NPG2 151 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 VSX1Q9NZR4 365 aaPredicted RBP12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 PLEKHA6Q9Y2H5 1048 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 RNF115Q9Y4L5 304 aa12.36□□□□□ -0.43
SHKBP1-217ENST00000598558 ARRDC5A6NEK1 342 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 E7EQL1 145 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 MPZL1O95297 269 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 GPANK1O95872 356 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 CD79AP11912 226 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 HOXB6P17509 224 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 CD53P19397 219 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 PTAFRP25105 342 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 HOXC12P31275 282 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 CAPZA2P47755 286 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 DAPP51397 102 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 RPS6KA3P51812 740 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 MRPS34P82930 218 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 GK3PQ14409 553 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 SGCAQ16586 387 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF672Q499Z4 452 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 SHQ1Q6PI26 577 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 UGT2A3Q6UWM9 527 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 TMEM108Q6UXF1 575 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 YTHDF3Q7Z739 585 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 CDH24Q86UP0 819 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF584Q8IVC4 421 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 LRRC18Q8N456 261 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 NPEPL1Q8NDH3 523 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNRF4Q8WWF5 429 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 IGFBPL1Q8WX77 278 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 NMNAT3Q96T66 252 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 TSSK6Q9BXA6 273 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 NUAK2Q9H093 628 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 SYT4Q9H2B2 425 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 STX18Q9P2W9 335 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 ST6GALNAC2Q9UJ37 374 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 MOKQ9UQ07 419 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 ABCA4P78363 2273 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 LRBAP50851 2863 aa12.35□□□□□ -0.43
SHKBP1-217ENST00000598558 OR6C68A6NDL8 312 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 ANKRD65E5RJM6 399 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 ATP6V1G2-DDX39BF2Z307 99 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 HS3ST1O14792 307 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 MGRN1O60291 552 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 SLC16A7O60669 478 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 DEAF1O75398 565 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 E2F6O75461 281 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms