RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 PGGHGQ32M88 737 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 TBRG1Q3YBR2 411 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 THEM4Q5T1C6 240 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 OTPQ5XKR4 325 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 FAM205BPQ63HN1 556 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 LPCAT4Q643R3 524 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 C12orf73Q69YU5 71 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 ZNF787Q6DD87 383 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 RPL13AP3Q6NVV1 102 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 ANKRD16Q6P6B7 361 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 MEX3BQ6ZN04 569 aaKnown RBP9.24□□□□□ -0.93
LIG1-210ENST00000596332 ZBTB46Q86UZ6 589 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 MYPOPQ86VE0 399 aaPredicted RBP9.24□□□□□ -0.93
LIG1-210ENST00000596332 SKA3Q8IX90 412 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 GPR137CQ8N3F9 429 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 SLC37A3Q8NCC5 494 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 C1orf162Q8NEQ5 155 aaPredicted RBP9.24□□□□□ -0.93
LIG1-210ENST00000596332 OR6N1Q8NGY5 312 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 KISS1RQ969F8 398 aaPredicted RBP9.24□□□□□ -0.93
LIG1-210ENST00000596332 SNX18Q96RF0 628 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 MBOAT4Q96T53 435 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 GABARAPL3Q9BY60 117 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 ULBP2Q9BZM5 246 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 GRIP2Q9C0E4 1043 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 NUAK2Q9H093 628 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 SYT4Q9H2B2 425 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 RASSF4Q9H2L5 321 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 TMEM38BQ9NVV0 291 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 STX18Q9P2W9 335 aaKnown RBP9.24□□□□□ -0.93
LIG1-210ENST00000596332 B9D1Q9UPM9 204 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 POFUT2Q9Y2G5 429 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 UNC79Q9P2D8 2635 aa9.24□□□□□ -0.93
LIG1-210ENST00000596332 ANKHD1Q8IWZ3 2542 aaKnown RBP9.24□□□□□ -0.93
LIG1-210ENST00000596332 A0A096LPE4 126 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 ARPC4-TTLL3A0A0A6YYG9 625 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 A0A1W2PPZ6 126 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 SH3D21A4FU49 640 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 TUBAL3A6NHL2 446 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 SURF4O15260 269 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 AKAP8O43823 692 aaKnown RBP9.23□□□□□ -0.93
LIG1-210ENST00000596332 MPZL1O95297 269 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 BAG2O95816 211 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 TFP02787 698 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 MMP7P09237 267 aaPredicted RBP9.23□□□□□ -0.93
LIG1-210ENST00000596332 PATE4P0C8F1 98 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 GAAP10253 952 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 CLUP10909 449 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 EPXP11678 715 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 PSKH1P11801 424 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 CRYGSP22914 178 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 GRK5P34947 590 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 ALDH3A2P51648 485 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 RPS6KA3P51812 740 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 ARHGDIAP52565 204 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 CLRN1P58418 232 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 ESRRGP62508 458 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 TUBA1BP68363 451 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 TUBA4AP68366 448 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 MRPS34P82930 218 aaKnown RBP9.23□□□□□ -0.93
LIG1-210ENST00000596332 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIG1-210ENST00000596332 NPRL3Q12980 569 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 CRMP1Q14194 572 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 ENDOGQ14249 297 aaKnown RBP9.23□□□□□ -0.93
LIG1-210ENST00000596332 TIMM23BQ5SRD1 257 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 OGFRL1Q5TC84 451 aaPredicted RBP9.23□□□□□ -0.93
LIG1-210ENST00000596332 LINC01590Q5TEZ4 76 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 SLX4IPQ5VYV7 408 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 KLHL24Q6TFL4 600 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 UGT2A3Q6UWM9 527 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 TUBA1AQ71U36 451 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 ADCK1Q86TW2 530 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 CYB561A3Q8NBI2 242 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 SDR9C7Q8NEX9 313 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 STEAP2Q8NFT2 490 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 OR2T33Q8NG76 320 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 OR52E2Q8NGJ4 325 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 DNAJC9Q8WXX5 260 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 HSD17B8Q92506 261 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 UBE2FQ969M7 185 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 DACH2Q96NX9 599 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 FOXB1Q99853 325 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 FN3KQ9H479 309 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 DCLRE1BQ9H816 532 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 SEC61A2Q9H9S3 476 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 CMC2Q9NRP2 79 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 KRT84Q9NSB2 600 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 TBC1D23Q9NUY8 699 aa9.23□□□□□ -0.93
LIG1-210ENST00000596332 CRNNQ9UBG3 495 aaPredicted RBP9.23□□□□□ -0.93
LIG1-210ENST00000596332 COA3Q9Y2R0 106 aaPredicted RBP9.23□□□□□ -0.93
LIG1-210ENST00000596332 DPRXA6NFQ7 191 aa9.22□□□□□ -0.93
LIG1-210ENST00000596332 M0R129 80 aa9.22□□□□□ -0.93
LIG1-210ENST00000596332 PRKYO43930 277 aa9.22□□□□□ -0.93
LIG1-210ENST00000596332 SLC16A7O60669 478 aa9.22□□□□□ -0.93
LIG1-210ENST00000596332 HOXB1P14653 301 aaPredicted RBP9.22□□□□□ -0.93
LIG1-210ENST00000596332 CDH2P19022 906 aaPredicted RBP9.22□□□□□ -0.93
LIG1-210ENST00000596332 SLC2A5P22732 501 aa9.22□□□□□ -0.93
LIG1-210ENST00000596332 POU1F1P28069 291 aa9.22□□□□□ -0.93
LIG1-210ENST00000596332 PEX2P28328 305 aa9.22□□□□□ -0.93
LIG1-210ENST00000596332 KIR2DL3P43628 341 aa9.22□□□□□ -0.93
LIG1-210ENST00000596332 RIPK1Q13546 671 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms