RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 B9A039 149 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 ARPC2O15144 300 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 SSX4O60224 188 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 FARS2O95363 451 aaKnown RBP13.07□□□□□ -0.32
TRIM28-205ENST00000595028 SEMG1P04279 462 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 OR4A8P0C604 315 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 RHCEP18577 417 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 ZNF84P51523 738 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 RAB1AP62820 205 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 MXRA7P84157 204 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 VLDLRP98155 873 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 PPP2R2BQ00005 443 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 SNTB2Q13425 540 aaKnown RBP13.07□□□□□ -0.32
TRIM28-205ENST00000595028 DGCR6Q14129 220 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 KRT72Q14CN4 511 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 EFNB3Q15768 340 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 GKAP1Q5VSY0 366 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-205ENST00000595028 FAM205BPQ63HN1 556 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 TBPL2Q6SJ96 375 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 OAFQ86UD1 273 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 IGFN1Q86VF2 1251 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 DEFB107AQ8IZN7 70 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 OR4K5Q8NGD3 323 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 OR51A7Q8NH64 312 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 FGFBP3Q8TAT2 258 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 HDAC2Q92769 488 aaKnown RBP13.07□□□□□ -0.32
TRIM28-205ENST00000595028 NSMCE2Q96MF7 247 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 TSPAN32Q96QS1 320 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 KCNK17Q96T54 332 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 CDRT15Q96T59 188 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 ALG12Q9BV10 488 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 SMURF2Q9HAU4 748 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 TMEM5Q9Y2B1 443 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 FAM32AQ9Y421 112 aaKnown RBP13.07□□□□□ -0.32
TRIM28-205ENST00000595028 PMF1-BGLAPU3KQ54 211 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 ABCA1O95477 2261 aa13.07□□□□□ -0.32
TRIM28-205ENST00000595028 SONP18583 2426 aaKnown RBP13.07□□□□□ -0.32
TRIM28-205ENST00000595028 RNF223E7ERA6 249 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 hCG_2039718K7EN88 272 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 CDC42EP2O14613 210 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 SLC2A10O95528 541 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 FAM107AO95990 144 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 PATE4P0C8F1 98 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 THBS4P35443 961 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 MNAT1P51948 309 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 CTXN1P60606 82 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 RPL27P61353 136 aaKnown RBP13.06□□□□□ -0.32
TRIM28-205ENST00000595028 FMODQ06828 376 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 CD47Q08722 323 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 DAG1Q14118 895 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 RAB35Q15286 201 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 SPATS1Q496A3 300 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 FGD3Q5JSP0 725 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 PODNL1Q6PEZ8 512 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 TMPRSS11FQ6ZWK6 438 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 DPPA2Q7Z7J5 298 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 ZNF584Q8IVC4 421 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 FITM2Q8N6M3 262 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 ZNF519Q8TB69 540 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 DHRS1Q96LJ7 313 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 TNFRSF13CQ96RJ3 184 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 SH3GL3Q99963 347 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 REG4Q9BYZ8 158 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 ANK2Q01484 3957 aa13.06□□□□□ -0.32
TRIM28-205ENST00000595028 IGKV1D-43A0A0B4J1Z2 117 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 TRBV4-1A0A0J9YWV2 114 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 DIRAS1O95057 198 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 ZNF35P13682 527 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 ITGA2P17301 1181 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 NPR2P20594 1047 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 NR4A1P22736 598 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 MSX2P35548 267 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-205ENST00000595028 LIMS1P48059 325 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 EFNA4P52798 201 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 MRPS34P82930 218 aaKnown RBP13.05□□□□□ -0.32
TRIM28-205ENST00000595028 RAB39AQ14964 217 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 SLC36A2Q495M3 483 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 IQCCQ4KMZ1 466 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 KRT80Q6KB66 452 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 CLEC2AQ6UVW9 174 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 RRM2BQ7LG56 351 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 SLC16A14Q7RTX9 510 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 CDK20Q8IZL9 346 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 ZNF525Q8N782 197 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 CCDC197Q8NCU1 140 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 PYURFQ96I23 114 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 FAM46AQ96IP4 442 aaKnown RBP13.05□□□□□ -0.32
TRIM28-205ENST00000595028 SORCS2Q96PQ0 1159 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 PLK3Q9H4B4 646 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 ZNF346Q9UL40 294 aaKnown RBP13.05□□□□□ -0.32
TRIM28-205ENST00000595028 UGT2A1Q9Y4X1 527 aa13.05□□□□□ -0.32
TRIM28-205ENST00000595028 CHD3Q12873 2000 aaKnown RBP13.05□□□□□ -0.32
TRIM28-205ENST00000595028 IGHV4-30-2A0A087WSY4 118 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 A6NIZ1 184 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 RNF212BA8MTL3 300 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 SERPINA5P05154 406 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 PPOXP50336 477 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 DSCR9P59020 149 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 RAP1BP61224 184 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 RAP1AP62834 184 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms