RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 GSK3BP49841 420 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 PDLIM4P50479 330 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 RPL27P61353 136 aaKnown RBP9.09□□□□□ -0.95
LIG3-212ENST00000590181 LGALS3BPQ08380 585 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 MST1LQ2TV78 715 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 ALG10Q5BKT4 473 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 SAMD4BQ5PRF9 694 aaKnown RBP9.09□□□□□ -0.95
LIG3-212ENST00000590181 CARD17Q5XLA6 110 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 GLYATQ6IB77 296 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 C16orf89Q6UX73 402 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 B3GLCTQ6Y288 498 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 PIGWQ7Z7B1 504 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 OAFQ86UD1 273 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 MDP1Q86V88 176 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 NKAIN4Q8IVV8 208 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 ALDH16A1Q8IZ83 802 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 LRRC17Q8N6Y2 441 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 NOXO1Q8NFA2 376 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 IPCEF1Q8WWN9 437 aaPredicted RBP9.09□□□□□ -0.95
LIG3-212ENST00000590181 ASB10Q8WXI3 467 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 MCHR2Q969V1 340 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 ZNF837Q96EG3 531 aaPredicted RBP9.09□□□□□ -0.95
LIG3-212ENST00000590181 BCL2L14Q9BZR8 327 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 TMEM160Q9NX00 188 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 MAGEL2Q9UJ55 1249 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 ENPP4Q9Y6X5 453 aa9.09□□□□□ -0.95
LIG3-212ENST00000590181 YLPM1P49750 1951 aaKnown RBP9.08□□□□□ -0.96
LIG3-212ENST00000590181 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIG3-212ENST00000590181 EFCAB9A8MZ26 197 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 LRRN3E7EW58 273 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 KPNA4O00629 521 aaPredicted RBP9.08□□□□□ -0.96
LIG3-212ENST00000590181 SYNGR3O43761 229 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 SERPINA1P01009 418 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 SAGP10523 405 aaPredicted RBP9.08□□□□□ -0.96
LIG3-212ENST00000590181 IFI30P13284 250 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 DRD4P21917 467 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 IFNGR2P38484 337 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 MRPS11P82912 194 aaKnown RBP9.08□□□□□ -0.96
LIG3-212ENST00000590181 VLDLRP98155 873 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 HGFACQ04756 655 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 SPOCK1Q08629 439 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 TBC1D28Q2M2D7 210 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 MTX3Q5HYI7 312 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 ARMC4Q5T2S8 1044 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 GKAP1Q5VSY0 366 aaPredicted RBP9.08□□□□□ -0.96
LIG3-212ENST00000590181 FAM27BQ5VT28 67 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 GPR139Q6DWJ6 353 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 ARL9Q6T311 187 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 ZNF730Q6ZMV8 503 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 SLC16A14Q7RTX9 510 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 TSPYL5Q86VY4 417 aaPredicted RBP9.08□□□□□ -0.96
LIG3-212ENST00000590181 TREML1Q86YW5 311 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 SKA3Q8IX90 412 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 PGAM4Q8N0Y7 254 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 LINC00471Q8N535 108 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 MCUR1Q96AQ8 359 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 FBXO17Q96EF6 278 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 ZNF75AQ96N20 296 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 TNFRSF13CQ96RJ3 184 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 KCNK17Q96T54 332 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 DOK1Q99704 481 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 NMNAT1Q9HAN9 279 aaPredicted RBP9.08□□□□□ -0.96
LIG3-212ENST00000590181 SLCO1C1Q9NYB5 712 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 TAGLN3Q9UI15 199 aa9.08□□□□□ -0.96
LIG3-212ENST00000590181 MEGF8Q7Z7M0 2845 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 SH3PXD2BA1X283 911 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 A8MV72 311 aaPredicted RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 H3BSA7 217 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 DYNC1I1O14576 645 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 XKRYO14609 159 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 TRMUO75648 421 aaKnown RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 SERPINI2O75830 405 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 KRT36O76013 467 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 HLA-HP01893 362 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 MT-ND5P03915 603 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 F13BP05160 661 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 H1F0P07305 194 aaKnown RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 APEHP13798 732 aaKnown RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 B4GALT1P15291 398 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 USF1P22415 310 aaPredicted RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 GIFP27352 417 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 CALCRP30988 508 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 LIPAP38571 399 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 AQP2P41181 271 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 GIPRP48546 466 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 SEC24CP53992 1094 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 NPRL3Q12980 569 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 KRTAP24-1Q3LI83 254 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 ZBED5Q49AG3 693 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 PHYHD1Q5SRE7 291 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 NRMQ8IXM6 262 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 ARIH2OSQ8N7S6 290 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 RBM15BQ8NDT2 890 aaKnown RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 PFN4Q8NHR9 129 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 C10orf105Q8TEF2 133 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 C11orf40Q8WZ69 217 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 HPS1Q92902 700 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 MRPL24Q96A35 216 aaKnown RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 HSH2DQ96JZ2 352 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 COG8Q96MW5 612 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms