RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	CDC42EP2	O14613	210 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	ARPC2	O15144	300 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	UBL3	O95164	117 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	H1F0	P07305	194 aa	Known RBP	11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	OR8G3P	P0DMU2	310 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	RHCE	P18577	417 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	SERPINF1	P36955	418 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	PTDSS1	P48651	473 aa	Known RBP	11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	SLC9A3	P48764	834 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	MYBPC1	Q00872	1141 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	CHRNB3	Q05901	458 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	FMOD	Q06828	376 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	TOP3A	Q13472	1001 aa	Predicted RBP	11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	TAF11	Q15544	211 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	ANKDD1A	Q495B1	522 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	VHLL	Q6RSH7	139 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	TMPRSS11F	Q6ZWK6	438 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	OAF	Q86UD1	273 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	IGFN1	Q86VF2	1251 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	ZNF584	Q8IVC4	421 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	DEFB107A	Q8IZN7	70 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	OR4K5	Q8NGD3	323 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	OR51A7	Q8NH64	312 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	FGFBP3	Q8TAT2	258 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	ZNF519	Q8TB69	540 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	FBXO17	Q96EF6	278 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	KCNK17	Q96T54	332 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	CDRT15	Q96T59	188 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	DENND2D	Q9H6A0	471 aa	Predicted RBP	11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	SMURF2	Q9HAU4	748 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	NDE1	Q9NXR1	346 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	UGT2A1	Q9Y4X1	527 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760		V9GYQ6	96 aa		11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	SON	P18583	2426 aa	Known RBP	11.51	□□□□□ -0.57
SREBF1-223	ENST00000584760	NBEAL1	Q6ZS30	2694 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	IGKV1D-43	A0A0B4J1Z2	117 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	TRBV4-1	A0A0J9YWV2	114 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	PHF1	O43189	567 aa	Predicted RBP	11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	TLX2	O43763	284 aa	Predicted RBP	11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	CD5L	O43866	347 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	SSX4	O60224	188 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	ENTPD5	O75356	428 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	GMNN	O75496	209 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	DIRAS1	O95057	198 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	SLC2A10	O95528	541 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	RAB36	O95755	333 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	OR4A8	P0C604	315 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	PATE4	P0C8F1	98 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	BMP4	P12644	408 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	ZNF35	P13682	527 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	ZNF26	P17031	533 aa	Predicted RBP	11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	THBS4	P35443	961 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	MSX2	P35548	267 aa	Predicted RBP	11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	LIMS1	P48059	325 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	ZNF84	P51523	738 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	NUDT6	P53370	316 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	CTXN1	P60606	82 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	RPL27	P61353	136 aa	Known RBP	11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	SNRPD2	P62316	118 aa	Known RBP	11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	RAB1A	P62820	205 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	CD47	Q08722	323 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	SNTB2	Q13425	540 aa	Known RBP	11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	SPATS1	Q496A3	300 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	FGD3	Q5JSP0	725 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	GKAP1	Q5VSY0	366 aa	Predicted RBP	11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	FAM205BP	Q63HN1	556 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	C16orf89	Q6UX73	402 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	TSPAN32	Q96QS1	320 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	SH3GL3	Q99963	347 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	FUZ	Q9BT04	418 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	ALG12	Q9BV10	488 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	FAM53C	Q9NYF3	392 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	FBXL3	Q9UKT7	428 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	TMEM5	Q9Y2B1	443 aa		11.5	□□□□□ -0.57
SREBF1-223	ENST00000584760	IGHV4-30-2	A0A087WSY4	118 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760		B9A039	149 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	FARS2	O95363	451 aa	Known RBP	11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	SERPINA5	P05154	406 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	NR4A1	P22736	598 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	OMP	P47874	163 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	MRPS34	P82930	218 aa	Known RBP	11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	MXRA7	P84157	204 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	DAG1	Q14118	895 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	RAB39A	Q14964	217 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	RAB35	Q15286	201 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	SEC23B	Q15437	767 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	CHRFAM7A	Q494W8	412 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	KRT80	Q6KB66	452 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	SLC25A47	Q6Q0C1	308 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	DPPA2	Q7Z7J5	298 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	ZNF525	Q8N782	197 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	CLDN22	Q8N7P3	220 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	CCDC197	Q8NCU1	140 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	NABP1	Q96AH0	204 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	PYURF	Q96I23	114 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	FAM46A	Q96IP4	442 aa	Known RBP	11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	NSMCE2	Q96MF7	247 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	SORCS2	Q96PQ0	1159 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	TNFRSF13C	Q96RJ3	184 aa		11.49	□□□□□ -0.57
SREBF1-223	ENST00000584760	PLK3	Q9H4B4	646 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms