RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 MR1Q95460 341 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 PGAM5Q96HS1 289 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 TCEAL2Q9H3H9 227 aaPredicted RBP9.9□□□□□ -0.83
CLK3-226ENST00000569406 TUBG2Q9NRH3 451 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 UBQLN4Q9NRR5 601 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 COMMD9Q9P000 198 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 RHCGQ9UBD6 479 aa9.9□□□□□ -0.83
CLK3-226ENST00000569406 CHD3Q12873 2000 aaKnown RBP9.9□□□□□ -0.83
CLK3-226ENST00000569406 BLACEA4D250 179 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 C9JQL5 133 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 DCTN6O00399 190 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 MAGEB4O15481 346 aaPredicted RBP9.89□□□□□ -0.83
CLK3-226ENST00000569406 KCNAB3O43448 404 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 ITGA10O75578 1167 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 ANXA5P08758 320 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 PGA3P0DJD8 388 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 TYRP1P17643 537 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 MPZP25189 248 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 GZMMP51124 257 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 TSPAN31Q12999 210 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 LAS2Q8IYD9 372 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 NRSN1Q8IZ57 195 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 CELF5Q8N6W0 485 aaKnown RBP9.89□□□□□ -0.83
CLK3-226ENST00000569406 MALSU1Q96EH3 234 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 HCFC2Q9Y5Z7 792 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 MUC22E2RYF6 1773 aaPredicted RBP9.89□□□□□ -0.83
CLK3-226ENST00000569406 ATG2AQ2TAZ0 1938 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 FAM171A2A8MVW0 826 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 C17orf105B2RV13 164 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 E9PQ18 207 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 FAM227AF5H4B4 570 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 CLDN9O95484 217 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 GALP22466 123 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 RPS14P62263 151 aaKnown RBP9.89□□□□□ -0.83
CLK3-226ENST00000569406 ACSM2AQ08AH3 577 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 HEPACAMQ14CZ8 416 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 C1orf53Q5VUE5 145 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 ACSM2BQ68CK6 577 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 HBMQ6B0K9 141 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 CNKSR3Q6P9H4 555 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 KMT5CQ86Y97 462 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 RGL4Q8IZJ4 473 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 METTL27Q8N6F8 245 aaPredicted RBP9.89□□□□□ -0.83
CLK3-226ENST00000569406 OR8U1Q8NH10 309 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 POP5Q969H6 163 aaKnown RBP9.89□□□□□ -0.83
CLK3-226ENST00000569406 RGMAQ96B86 450 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 HIST1H2BLQ99880 126 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 ZBP1Q9H171 429 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 TCFL5Q9UL49 500 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 SLCO1B1Q9Y6L6 691 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 CACNA1CQ13936 2221 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 KIAA1549LQ6ZVL6 1849 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 SERTM2A0A1B0GWG4 89 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 VSTM5A8MXK1 200 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 CCL25O15444 150 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 ZNF264O43296 627 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 DOK2O60496 412 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 UBL3O95164 117 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 IFNA6P05013 189 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 HTR2CP28335 458 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 CCR8P51685 355 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 ERVFC1-1P60608 527 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 TPBGQ13641 420 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 ARL6IP1Q15041 203 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 MED27Q6P2C8 311 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 CATSPERDQ86XM0 798 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 SELENOHQ8IZQ5 122 aaKnown RBP9.89□□□□□ -0.83
CLK3-226ENST00000569406 NXPE1Q8N323 547 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 KCNRGQ8N5I3 272 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 SLC35G3Q8N808 338 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 OR52N4Q8NGI2 321 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 CRISPLD2Q9H0B8 497 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 MYOTQ9UBF9 498 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 IL19Q9UHD0 177 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 HS3ST2Q9Y278 367 aa9.89□□□□□ -0.83
CLK3-226ENST00000569406 ELOA3CA0A087WX78 387 aaPredicted RBP9.88□□□□□ -0.83
CLK3-226ENST00000569406 SLC5A10A0PJK1 596 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 NKX6-3A6NJ46 265 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 RPN2P04844 631 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 SERPINA5P05154 406 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 CST2P09228 141 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 C1SP09871 688 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 COL9A2Q14055 689 aaPredicted RBP9.88□□□□□ -0.83
CLK3-226ENST00000569406 UBE2V2Q15819 145 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 IL34Q6ZMJ4 242 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 CALHM3Q86XJ0 350 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 CMTM8Q8IZV2 173 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 RNF175Q8N4F7 328 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 FRMD1Q8N878 549 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 ARSGQ96EG1 525 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 KIRREL1Q96J84 757 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 TP53RKQ96S44 253 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 G6PC3Q9BUM1 346 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 RAB33BQ9H082 229 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 TUBA4BQ9H853 241 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 HCFC1R1Q9NWW0 138 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 SNRPGP15A8MWD9 76 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 IDSB3KWA1 339 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 PYCARD-AS1I3L0S3 204 aa9.88□□□□□ -0.83
CLK3-226ENST00000569406 J3KTA2 159 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms