RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 KLRK1P26718 216 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 HTR2CP28335 458 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 BRS3P32247 399 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TNFSF8P32971 234 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TIMP3P35625 211 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 MMP12P39900 470 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CEACAM3P40198 252 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PBX3P40426 434 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 AKR1C3P42330 323 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 RBM34P42696 430 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 GLP1RP43220 463 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 NPBWR1P48145 328 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ARRB1P49407 418 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 CYB561P49447 251 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CRISP1P54107 249 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CDKN2DP55273 166 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 MLF1P58340 268 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 STXBP1P61764 594 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 WDR5P61964 334 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 EIF5AP63241 154 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 SLC35A2P78381 396 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CCL7P80098 99 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CD47Q08722 323 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CAPSQ13938 189 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CLINT1Q14677 625 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 GRM4Q14833 912 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 JOSD1Q15040 202 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 CEBPEQ15744 281 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 RAB11BQ15907 218 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TAF9Q16594 264 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CTU2Q2VPK5 515 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZNF284Q2VY69 593 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TMEM249Q2WGJ8 235 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TIMM50Q3ZCQ8 353 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SLC22A6Q4U2R8 563 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SPIN4Q56A73 249 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 MESTQ5EB52 335 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 XKR6Q5GH73 641 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TMEM196Q5HYL7 178 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 COL5A1-AS1Q5SY13 56 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZNF691Q5VV52 312 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 LIPKQ5VXJ0 399 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CARD17Q5XLA6 110 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 KIAA0930Q6ICG6 404 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 LAIR2Q6ISS4 152 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 H3F3CQ6NXT2 135 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PGBD2Q6P3X8 592 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PET117Q6UWS5 81 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 UNQ9370/PRO34162Q6UXP9 181 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 HACD2Q6Y1H2 254 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 DEF8Q6ZN54 512 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 LRRC70Q7Z2Q7 622 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 C1QL2Q7Z5L3 287 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SPATA19Q7Z5L4 167 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 C5orf24Q7Z6I8 188 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 VTCN1Q7Z7D3 282 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 LINC01551Q86U37 167 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TSPAN33Q86UF1 283 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ADIPOR2Q86V24 386 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PIM3Q86V86 326 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 GLCCI1Q86VQ1 547 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 RBM45Q8IUH3 476 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 SLC30A8Q8IWU4 369 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 KLHDC8BQ8IXV7 354 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZNF100Q8IYN0 542 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 HS3ST5Q8IZT8 346 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 C11orf42Q8N5U0 333 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 RNF152Q8N8N0 203 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 EXD3Q8N9H8 876 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 FBXL13Q8NEE6 735 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PROKR2Q8NFJ6 384 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 BEST4Q8NFU0 473 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR4F15Q8NGB8 312 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR4K14Q8NGD5 310 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR10AD1Q8NGE0 317 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR2AP1Q8NGE2 309 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR51D1Q8NGF3 324 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR10W1Q8NGF6 305 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR10D4PQ8NGN7 298 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 OR13C8Q8NGS7 320 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ZCCHC10Q8TBK6 192 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TMEM163Q8TC26 289 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 M1APQ8TC57 530 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 RNASEH2CQ8TDP1 164 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 CCDC107Q8WV48 283 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SMPDL3BQ92485 455 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PIGBQ92521 554 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CNOT9Q92600 299 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 RPUSD4Q96CM3 377 aaKnown RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 HAVCR1Q96D42 359 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 ELMOD3Q96FG2 381 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 AURKBQ96GD4 344 aaPredicted RBP2.93□□□□□ -1.94
VPS35-208ENST00000568612 AKR1E2Q96JD6 320 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 MUS81Q96NY9 551 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 PANX1Q96RD7 426 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 CCDC3Q9BQI4 270 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 GINS4Q9BRT9 223 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SYT17Q9BSW7 474 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 TMEM43Q9BTV4 400 aa2.93□□□□□ -1.94
VPS35-208ENST00000568612 SCNM1Q9BWG6 230 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms