RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 POLR2J3Q9H1A7 115 aaKnown RBP13.77□□□□□ -0.21
CLN3-229ENST00000567963 C1orf198Q9H425 327 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 ZNF275Q9NSD4 429 aaPredicted RBP13.77□□□□□ -0.21
CLN3-229ENST00000567963 C20orf141Q9NUB4 165 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 RIMS3Q9UJD0 308 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 ANK2Q01484 3957 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 IGLV3-9A0A075B6K5 115 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 MCIDASD6RGH6 385 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 FXYD1O00168 92 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 MGRN1O60291 552 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 TRMUO75648 421 aaKnown RBP13.76□□□□□ -0.21
CLN3-229ENST00000567963 NCR1O76036 304 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 OR7A10O76100 309 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 SNAP29O95721 258 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 NPPAP01160 153 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 TSPAN19P0C672 248 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 ACADSP16219 412 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 AQP2P41181 271 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 ZNF84P51523 738 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 ZNF133P52736 654 aaPredicted RBP13.76□□□□□ -0.21
CLN3-229ENST00000567963 UCP2P55851 309 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 SELENOVP59797 346 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 PIN1Q13526 163 aaPredicted RBP13.76□□□□□ -0.21
CLN3-229ENST00000567963 NKPD1Q17RQ9 610 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 ALKBH6Q3KRA9 238 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 DEF8Q6ZN54 512 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 LRRC18Q8N456 261 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 RFLNBQ8N5W9 214 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 NOXO1Q8NFA2 376 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 CLDND2Q8NHS1 167 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 SYNPRQ8TBG9 265 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 TMEM239Q8WW34 195 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 LIPHQ8WWY8 451 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 ASB10Q8WXI3 467 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 TMEM120AQ9BXJ8 343 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 CDH20Q9HBT6 801 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 INIPQ9NRY2 104 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 TAAR3PQ9P1P4 343 aa13.76□□□□□ -0.21
CLN3-229ENST00000567963 IQCMA0A1B0GVH7 501 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 WNT9BO14905 357 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 SHOX2O60902 331 aaPredicted RBP13.75□□□□□ -0.21
CLN3-229ENST00000567963 OR5F1O95221 314 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 LCKP06239 509 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 MMP7P09237 267 aaPredicted RBP13.75□□□□□ -0.21
CLN3-229ENST00000567963 PCMT1P22061 227 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 SRP14P37108 136 aaKnown RBP13.75□□□□□ -0.21
CLN3-229ENST00000567963 RAD52P43351 418 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 MAGEB1P43366 347 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 OR1E2P47887 323 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 KLF3P57682 345 aaPredicted RBP13.75□□□□□ -0.21
CLN3-229ENST00000567963 ERVS71-1P61550 626 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 PLP2Q04941 152 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 TBC1D28Q2M2D7 210 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 MMEL1Q495T6 779 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 COQ5Q5HYK3 327 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 C10orf128Q5T292 105 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 HDDC2Q7Z4H3 204 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 RBM15BQ8NDT2 890 aaKnown RBP13.75□□□□□ -0.21
CLN3-229ENST00000567963 OR1J2Q8NGS2 313 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 ZNF519Q8TB69 540 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 SGTBQ96EQ0 304 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 ZNF583Q96ND8 569 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 TSPAN32Q96QS1 320 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 BCL2L14Q9BZR8 327 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 OR51B6Q9H340 312 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 NARFLQ9H6Q4 476 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 GPR160Q9UJ42 338 aa13.75□□□□□ -0.21
CLN3-229ENST00000567963 C17orf100A8MU93 164 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 TCF21O43680 179 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 RP2O75695 350 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 IFNA14P01570 189 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 SAGP10523 405 aaPredicted RBP13.74□□□□□ -0.21
CLN3-229ENST00000567963 DAP3P51398 398 aaKnown RBP13.74□□□□□ -0.21
CLN3-229ENST00000567963 LAPTM4AQ15012 233 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 ARMC4Q5T2S8 1044 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 ERICH5Q6P6B1 374 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 GLCCI1Q86VQ1 547 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 MOSPD2Q8NHP6 518 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 C10orf82Q8WW14 230 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 C11orf40Q8WZ69 217 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 ZNF416Q9BWM5 594 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 LRMDAQ9H2I8 198 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 SIAEQ9HAT2 523 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 HINT3Q9NQE9 182 aaKnown RBP13.74□□□□□ -0.21
CLN3-229ENST00000567963 MRGBPQ9NV56 204 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 SLCO1C1Q9NYB5 712 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 STX18Q9P2W9 335 aaKnown RBP13.74□□□□□ -0.21
CLN3-229ENST00000567963 FAM157AC9JC47 383 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 MRASO14807 208 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 PPIHO43447 177 aaKnown RBP13.74□□□□□ -0.21
CLN3-229ENST00000567963 SLC2A10O95528 541 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 TFP02787 698 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 THRBP10828 461 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 CCL8P80075 99 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 MRPS34P82930 218 aaKnown RBP13.74□□□□□ -0.21
CLN3-229ENST00000567963 KLF10Q13118 480 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 TMEM154Q6P9G4 183 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 RINLQ6ZS11 566 aa13.74□□□□□ -0.21
CLN3-229ENST00000567963 CPEB3Q8NE35 698 aaKnown RBP13.74□□□□□ -0.21
CLN3-229ENST00000567963 TMEM186Q96B77 213 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms