RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ANOS1P23352 680 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 CD40P25942 277 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 HGFACQ04756 655 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 PIGFQ07326 219 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 TSPAN31Q12999 210 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 KPNB1Q14974 876 aaKnown RBP8.01□□□□□ -1.13
VPS35-206ENST00000565228 TMEM255AQ5JRV8 349 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 ANKRD16Q6P6B7 361 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 PAMR1Q6UXH9 720 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 FOXL2NBQ6ZUU3 175 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 C17orf78Q8N4C9 275 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 PAQR4Q8N4S7 273 aaPredicted RBP8.01□□□□□ -1.13
VPS35-206ENST00000565228 ARIH2OSQ8N7S6 290 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 OR10G2Q8NGC3 310 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 GNPDA2Q8TDQ7 276 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 NSMAFQ92636 917 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 AKAP1Q92667 903 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS35-206ENST00000565228 GTPBP3Q969Y2 492 aaKnown RBP8.01□□□□□ -1.13
VPS35-206ENST00000565228 RNF166Q96A37 237 aaPredicted RBP8.01□□□□□ -1.13
VPS35-206ENST00000565228 FBXO17Q96EF6 278 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 LRGUKQ96M69 825 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 ADAD1Q96M93 576 aaKnown RBP8.01□□□□□ -1.13
VPS35-206ENST00000565228 FEVQ99581 238 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 FOXB1Q99853 325 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 FN3KQ9H479 309 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 ARMC1Q9NVT9 282 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 ST6GALNAC2Q9UJ37 374 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 TMEM5Q9Y2B1 443 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 SAMHD1Q9Y3Z3 626 aaKnown RBP8.01□□□□□ -1.13
VPS35-206ENST00000565228 CHD3Q12873 2000 aaKnown RBP8.01□□□□□ -1.13
VPS35-206ENST00000565228 HTR3EA5X5Y0 456 aa8□□□□□ -1.13
VPS35-206ENST00000565228 OR6C68A6NDL8 312 aa8□□□□□ -1.13
VPS35-206ENST00000565228 OR6C65A6NJZ3 312 aa8□□□□□ -1.13
VPS35-206ENST00000565228 ANKRD65E5RJM6 399 aa8□□□□□ -1.13
VPS35-206ENST00000565228 ATP6V1G2-DDX39BF2Z307 99 aa8□□□□□ -1.13
VPS35-206ENST00000565228 SOCS2O14508 198 aa8□□□□□ -1.13
VPS35-206ENST00000565228 ABCD4O14678 606 aa8□□□□□ -1.13
VPS35-206ENST00000565228 ARHGEF9O43307 516 aa8□□□□□ -1.13
VPS35-206ENST00000565228 ATP5HO75947 161 aa8□□□□□ -1.13
VPS35-206ENST00000565228 KRT33AO76009 404 aa8□□□□□ -1.13
VPS35-206ENST00000565228 KRT36O76013 467 aa8□□□□□ -1.13
VPS35-206ENST00000565228 IGHG1P01857 330 aa8□□□□□ -1.13
VPS35-206ENST00000565228 CBR1P16152 277 aa8□□□□□ -1.13
VPS35-206ENST00000565228 HIST1H1CP16403 213 aaKnown RBP8□□□□□ -1.13
VPS35-206ENST00000565228 ZNF14P17017 642 aaPredicted RBP8□□□□□ -1.13
VPS35-206ENST00000565228 CLRN1P58418 232 aa8□□□□□ -1.13
VPS35-206ENST00000565228 PRPS1P60891 318 aa8□□□□□ -1.13
VPS35-206ENST00000565228 ENDOGQ14249 297 aaKnown RBP8□□□□□ -1.13
VPS35-206ENST00000565228 MST1LQ2TV78 715 aa8□□□□□ -1.13
VPS35-206ENST00000565228 CLEC12AQ5QGZ9 265 aa8□□□□□ -1.13
VPS35-206ENST00000565228 OR7E24Q6IFN5 339 aa8□□□□□ -1.13
VPS35-206ENST00000565228 SMARCD3Q6STE5 483 aa8□□□□□ -1.13
VPS35-206ENST00000565228 LYPD4Q6UWN0 246 aa8□□□□□ -1.13
VPS35-206ENST00000565228 ZNF813Q6ZN06 617 aa8□□□□□ -1.13
VPS35-206ENST00000565228 AMIGO2Q86SJ2 522 aa8□□□□□ -1.13
VPS35-206ENST00000565228 CDH24Q86UP0 819 aa8□□□□□ -1.13
VPS35-206ENST00000565228 P2RY8Q86VZ1 359 aa8□□□□□ -1.13
VPS35-206ENST00000565228 SLC22A24Q8N4F4 322 aa8□□□□□ -1.13
VPS35-206ENST00000565228 IQCF1Q8N6M8 205 aa8□□□□□ -1.13
VPS35-206ENST00000565228 FANK1Q8TC84 345 aa8□□□□□ -1.13
VPS35-206ENST00000565228 LRTOMTQ8WZ04 291 aa8□□□□□ -1.13
VPS35-206ENST00000565228 HCAR1Q9BXC0 346 aa8□□□□□ -1.13
VPS35-206ENST00000565228 DGCR6LQ9BY27 220 aa8□□□□□ -1.13
VPS35-206ENST00000565228 SYT4Q9H2B2 425 aa8□□□□□ -1.13
VPS35-206ENST00000565228 DENND2DQ9H6A0 471 aaPredicted RBP8□□□□□ -1.13
VPS35-206ENST00000565228 UBTD1Q9HAC8 227 aa8□□□□□ -1.13
VPS35-206ENST00000565228 IL20Q9NYY1 176 aa8□□□□□ -1.13
VPS35-206ENST00000565228 VSX1Q9NZR4 365 aaPredicted RBP8□□□□□ -1.13
VPS35-206ENST00000565228 MOKQ9UQ07 419 aa8□□□□□ -1.13
VPS35-206ENST00000565228 AMDHD2Q9Y303 409 aa8□□□□□ -1.13
VPS35-206ENST00000565228 ACANP16112 2415 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 IGLV1-36A0A0B4J1U3 117 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 PRSS37A4D1T9 235 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 FAM171A2A8MVW0 826 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 CENPBD1B2RD01 187 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 HS3ST1O14792 307 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 AKAP8O43823 692 aaKnown RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 MITFO75030 526 aaPredicted RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 NDUFS7O75251 213 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 GAAP10253 952 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 CCL2P13500 99 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 EPHA2P29317 976 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 NOS3P29474 1203 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 SDHAP31040 664 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 IFNA8P32881 189 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 RPL4P36578 427 aaKnown RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 GIPRP48546 466 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 DAPP51397 102 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 DAP3P51398 398 aaKnown RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 IDH3GP51553 393 aaPredicted RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 SH3BGRP55822 239 aaPredicted RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 SMIM11AP58511 58 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 ACTR3P61158 418 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 KRR1Q13601 381 aaKnown RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 RAB39AQ14964 217 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 MEP1BQ16820 701 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 ANKDD1AQ495B1 522 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 ZNF672Q499Z4 452 aaPredicted RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 SLC35F1Q5T1Q4 408 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 C1orf146Q5VVC0 180 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms