RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TMEM53Q6P2H8 277 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 PODNL1Q6PEZ8 512 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 MBOAT2Q6ZWT7 520 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 PGAM4Q8N0Y7 254 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 LRRC75AQ8NAA5 344 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 NSMAFQ92636 917 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 CDRT15Q96T59 188 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 SEPHS2Q99611 448 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 FBXL3Q9UKT7 428 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 SAMD4AQ9UPU9 718 aaKnown RBP13.53□□□□□ -0.24
VPS39-203ENST00000561797 CMAHPQ9Y471 501 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 SPEF1Q9Y4P9 236 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 FKBP7Q9Y680 259 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 RTTNQ86VV8 2226 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 NF1P21359 2839 aa13.53□□□□□ -0.24
VPS39-203ENST00000561797 IGKV1D-43A0A0B4J1Z2 117 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 TMEM129A0AVI4 362 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 INAFM1C9JVW0 142 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 GPRIN2O60269 458 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 SERPINA5P05154 406 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 H1F0P07305 194 aaKnown RBP13.52□□□□□ -0.25
VPS39-203ENST00000561797 CCL2P13500 99 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 PPP2R2BQ00005 443 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 KRTAP1-1Q07627 177 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 FHL1Q13642 323 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 TAF11Q15544 211 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 CARTPTQ16568 116 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 SGCAQ16586 387 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 SLC36A2Q495M3 483 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 FGD3Q5JSP0 725 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 C10orf128Q5T292 105 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 GKAP1Q5VSY0 366 aaPredicted RBP13.52□□□□□ -0.25
VPS39-203ENST00000561797 ZNF584Q8IVC4 421 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 ZCCHC24Q8N2G6 241 aaKnown RBP13.52□□□□□ -0.25
VPS39-203ENST00000561797 CLDN22Q8N7P3 220 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 SLC7A13Q8TCU3 470 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 TSPAN32Q96QS1 320 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 KCNK17Q96T54 332 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 DOK1Q99704 481 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 ANKRD19PQ9H560 264 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 DYNLRB1Q9NP97 96 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 NDUFAF4Q9P032 175 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 ABCA1O95477 2261 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 CSPG4Q6UVK1 2322 aa13.52□□□□□ -0.25
VPS39-203ENST00000561797 ZANQ9Y493 2812 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 NPIPB13A6NJU9 1138 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 NPIPB4C9JG80 1138 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 CDC42EP2O14613 210 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 IGHMP01871 453 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 TP53P04637 393 aaPredicted RBP13.51□□□□□ -0.25
VPS39-203ENST00000561797 HSD17B1P14061 328 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 RHCEP18577 417 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 RPL4P36578 427 aaKnown RBP13.51□□□□□ -0.25
VPS39-203ENST00000561797 SLC9A3P48764 834 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 PPOXP50336 477 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 PDLIM4P50479 330 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 ZNF133P52736 654 aaPredicted RBP13.51□□□□□ -0.25
VPS39-203ENST00000561797 ERVK-25P63136 954 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 VLDLRP98155 873 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 KRT72Q14CN4 511 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 MSMPQ1L6U9 139 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 ANKDD1AQ495B1 522 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 ZBED5Q49AG3 693 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 SAMD4BQ5PRF9 694 aaKnown RBP13.51□□□□□ -0.25
VPS39-203ENST00000561797 SLC25A47Q6Q0C1 308 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 TMPRSS11FQ6ZWK6 438 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 DEFB107AQ8IZN7 70 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 SLC30A7Q8NEW0 376 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 OR52J3Q8NH60 311 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 C10orf105Q8TEF2 133 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 NMD3Q96D46 503 aaKnown RBP13.51□□□□□ -0.25
VPS39-203ENST00000561797 FAM46AQ96IP4 442 aaKnown RBP13.51□□□□□ -0.25
VPS39-203ENST00000561797 C7orf34Q96L11 122 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 RBP7Q96R05 134 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 CCT8L2Q96SF2 557 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 ALG12Q9BV10 488 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 RAB1BQ9H0U4 201 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 KCNN2Q9H2S1 579 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 OR51B6Q9H340 312 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 GORASP2Q9H8Y8 452 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 CD300AQ9UGN4 299 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 MAGEL2Q9UJ55 1249 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 FZR1Q9UM11 496 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 UGT2A1Q9Y4X1 527 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 NIPBLQ6KC79 2804 aaeCLIP13.51□□□□□ -0.25
VPS39-203ENST00000561797 TLN2Q9Y4G6 2542 aa13.51□□□□□ -0.25
VPS39-203ENST00000561797 FN1P02751 2386 aaKnown RBP13.5□□□□□ -0.25
VPS39-203ENST00000561797 IQCMA0A1B0GVH7 501 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 A6NIZ1 184 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 CSF3P09919 207 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 NR2C1P13056 603 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 SLC25A16P16260 332 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 GLRXP35754 106 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 RAP1BP61224 184 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 RAP1AP62834 184 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 MRPS34P82930 218 aaKnown RBP13.5□□□□□ -0.25
VPS39-203ENST00000561797 NRN1LQ496H8 165 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 C16orf89Q6UX73 402 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 DPPA2Q7Z7J5 298 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 PAQR4Q8N4S7 273 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms