RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ERICH5Q6P6B1 374 aa8.78□□□□□ -1
LDLR-214ENST00000560628 SLC16A14Q7RTX9 510 aa8.78□□□□□ -1
LDLR-214ENST00000560628 MEX3DQ86XN8 651 aaKnown RBP8.78□□□□□ -1
LDLR-214ENST00000560628 POU5F2Q8N7G0 328 aa8.78□□□□□ -1
LDLR-214ENST00000560628 PCYOX1LQ8NBM8 494 aa8.78□□□□□ -1
LDLR-214ENST00000560628 SLC30A7Q8NEW0 376 aa8.78□□□□□ -1
LDLR-214ENST00000560628 ASB10Q8WXI3 467 aa8.78□□□□□ -1
LDLR-214ENST00000560628 NSMAFQ92636 917 aa8.78□□□□□ -1
LDLR-214ENST00000560628 MRPL13Q9BYD1 178 aaKnown RBP8.78□□□□□ -1
LDLR-214ENST00000560628 MS4A5Q9H3V2 200 aa8.78□□□□□ -1
LDLR-214ENST00000560628 CDH20Q9HBT6 801 aa8.78□□□□□ -1
LDLR-214ENST00000560628 GID8Q9NWU2 228 aa8.78□□□□□ -1
LDLR-214ENST00000560628 ARMCX1Q9P291 453 aa8.78□□□□□ -1
LDLR-214ENST00000560628 FBXL3Q9UKT7 428 aa8.78□□□□□ -1
LDLR-214ENST00000560628 MED31Q9Y3C7 131 aa8.78□□□□□ -1
LDLR-214ENST00000560628 COL6A5A8TX70 2615 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 DNHD1Q96M86 4753 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 ENTPD5O75356 428 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 SLC2A10O95528 541 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 CLPTM1O96005 669 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 LCKP06239 509 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 TACSTD2P09758 323 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 DAP3P51398 398 aaKnown RBP8.77□□□□□ -1.01
LDLR-214ENST00000560628 ERVS71-1P61550 626 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 RPS23P62266 143 aaKnown RBP8.77□□□□□ -1.01
LDLR-214ENST00000560628 GUCY1A3Q02108 690 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 TOP3AQ13472 1001 aaPredicted RBP8.77□□□□□ -1.01
LDLR-214ENST00000560628 SGCAQ16586 387 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 HIST3H3Q16695 136 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 SLC36A2Q495M3 483 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 ARMC4Q5T2S8 1044 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 RGS7BPQ6MZT1 257 aaPredicted RBP8.77□□□□□ -1.01
LDLR-214ENST00000560628 MICU2Q8IYU8 434 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 ICA1LQ8NDH6 482 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 RBM15BQ8NDT2 890 aaKnown RBP8.77□□□□□ -1.01
LDLR-214ENST00000560628 NOXO1Q8NFA2 376 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 OR2T12Q8NG77 320 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 HDAC2Q92769 488 aaKnown RBP8.77□□□□□ -1.01
LDLR-214ENST00000560628 RCN3Q96D15 328 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 TSPAN32Q96QS1 320 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 NARFLQ9H6Q4 476 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 ZNF446Q9NWS9 450 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 CMTM6Q9NX76 183 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 TAAR3PQ9P1P4 343 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 RHCGQ9UBD6 479 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 SLC7A8Q9UHI5 535 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 SNX13Q9Y5W8 968 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 CAPN7Q9Y6W3 813 aa8.77□□□□□ -1.01
LDLR-214ENST00000560628 IGKV1D-43A0A0B4J1Z2 117 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 IQCMA0A1B0GVH7 501 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 ELOVL7A1L3X0 281 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 FAM220BPB1ANY3 271 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 J3KTA2 159 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 WNT9BO14905 357 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 THRBP10828 461 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 IFI30P13284 250 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 HNF1AP20823 631 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 CCNOP22674 350 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 MAGEB1P43366 347 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 UCP2P55851 309 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 SELENOVP59797 346 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 SELENOWP63302 87 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 HSF2Q03933 536 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 PLP2Q04941 152 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 FMODQ06828 376 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 ST3GAL3Q11203 375 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 NKPD1Q17RQ9 610 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 TBC1D28Q2M2D7 210 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 KRTAP24-1Q3LI83 254 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 VTCN1Q7Z7D3 282 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 IGFN1Q86VF2 1251 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 CLDN22Q8N7P3 220 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 LINC01356Q8N9X3 169 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 CPEB3Q8NE35 698 aaKnown RBP8.76□□□□□ -1.01
LDLR-214ENST00000560628 OR1J2Q8NGS2 313 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 SYNPRQ8TBG9 265 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 LIPHQ8WWY8 451 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 C11orf40Q8WZ69 217 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 RDH5Q92781 318 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 HPS1Q92902 700 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 YIPF5Q969M3 257 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 SEPHS2Q99611 448 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 POLR2J2Q9GZM3 115 aaKnown RBP8.76□□□□□ -1.01
LDLR-214ENST00000560628 POLR2J3Q9H1A7 115 aaKnown RBP8.76□□□□□ -1.01
LDLR-214ENST00000560628 LRMDAQ9H2I8 198 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 KCNN2Q9H2S1 579 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 MRGBPQ9NV56 204 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 ZNF346Q9UL40 294 aaKnown RBP8.76□□□□□ -1.01
LDLR-214ENST00000560628 A4GNTQ9UNA3 340 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 UGT2A1Q9Y4X1 527 aa8.76□□□□□ -1.01
LDLR-214ENST00000560628 SLC22A23A1A5C7 686 aa8.75□□□□□ -1.01
LDLR-214ENST00000560628 PPIHO43447 177 aaKnown RBP8.75□□□□□ -1.01
LDLR-214ENST00000560628 CDC14BO60729 498 aa8.75□□□□□ -1.01
LDLR-214ENST00000560628 NCR1O76036 304 aa8.75□□□□□ -1.01
LDLR-214ENST00000560628 PTHP01270 115 aa8.75□□□□□ -1.01
LDLR-214ENST00000560628 MMP7P09237 267 aaPredicted RBP8.75□□□□□ -1.01
LDLR-214ENST00000560628 TSPAN19P0C672 248 aa8.75□□□□□ -1.01
LDLR-214ENST00000560628 MAKP20794 623 aa8.75□□□□□ -1.01
LDLR-214ENST00000560628 APLNRP35414 380 aa8.75□□□□□ -1.01
LDLR-214ENST00000560628 RAD52P43351 418 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms