RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 HOXC12P31275 282 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 CCKARP32238 428 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 CDAP32320 146 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 ETFDHQ16134 617 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 HIKESHIQ53FT3 197 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 SLX4IPQ5VYV7 408 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 DNM1P34Q6PK57 102 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 ZNF813Q6ZN06 617 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 NPEPL1Q8NDH3 523 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 STEAP2Q8NFT2 490 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 NMD3Q96D46 503 aaKnown RBP12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 FOXB1Q99853 325 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 HDHD5Q9BXW7 423 aa12.34□□□□□ -0.43
VIPAS39-208ENST00000556412 AHCYL1O43865 530 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 KHDRBS3O75525 346 aaKnown RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 CLDN1O95832 211 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 GYPBP06028 91 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 PAICSP22234 425 aaKnown RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 GUCA1AP43080 201 aaPredicted RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 CAPZA2P47755 286 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 PTDSS1P48651 473 aaKnown RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 SH3BGRP55822 239 aaPredicted RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 ZNF362Q5T0B9 420 aaPredicted RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 PLBD1Q6P4A8 553 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 SLC25A47Q6Q0C1 308 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 KLHL24Q6TFL4 600 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 OR6V1Q8N148 313 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 ZNF555Q8NEP9 628 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 PROKR2Q8NFJ6 384 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 OR51L1Q8NGJ5 315 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 OR1K1Q8NGR3 316 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 FAM81AQ8TBF8 368 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 CYGBQ8WWM9 190 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 ZC3HAV1LQ96H79 300 aaKnown RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 IL4I1Q96RQ9 567 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 MED18Q9BUE0 208 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 GRIP2Q9C0E4 1043 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 VCX3BQ9H321 246 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 MED20Q9H944 212 aa12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 KLF2Q9Y5W3 355 aaPredicted RBP12.33□□□□□ -0.44
VIPAS39-208ENST00000556412 MPDZO75970 2070 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 TUBAL3A6NHL2 446 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 PRR23D1E9PI22 279 aaPredicted RBP12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 DCTN6O00399 190 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 PRKYO43930 277 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 PRR23D2P0DMB1 279 aaPredicted RBP12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 CRABP1P29762 137 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 PYCR1P32322 319 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 PCYT1AP49585 367 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 CDC42P60953 191 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 GABRA6Q16445 453 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 SGCAQ16586 387 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 C10orf128Q5T292 105 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 OTPQ5XKR4 325 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 C12orf73Q69YU5 71 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 OR7E24Q6IFN5 339 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 ANKRD16Q6P6B7 361 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 TCEANCQ8N8B7 351 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 OR52N5Q8NH56 324 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 LINC01560Q8TB33 94 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 TMEM38BQ9NVV0 291 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 IMPAD1Q9NX62 359 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 COA3Q9Y2R0 106 aaPredicted RBP12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 GMPPBQ9Y5P6 360 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 PHF3Q92576 2039 aaKnown RBP12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 DOCK7Q96N67 2140 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 TLX2O43763 284 aaPredicted RBP12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 GPANK1O95872 356 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 HLA-DQA2P01906 255 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 CLUP10909 449 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 UBE2NP61088 152 aaKnown RBP12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 TUBA1BP68363 451 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 TUBA4AP68366 448 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 TBRG1Q3YBR2 411 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 KLHL12Q53G59 568 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 TUBA1AQ71U36 451 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 CPOQ8IVL8 374 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 LRRC18Q8N456 261 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 C1orf162Q8NEQ5 155 aaPredicted RBP12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 OR2T4Q8NH00 348 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 RDH12Q96NR8 316 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 SNX18Q96RF0 628 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 HCAR1Q9BXC0 346 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 OR51V1Q9H2C8 321 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 FAM118AQ9NWS6 357 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 NDRG3Q9UGV2 375 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 B9D1Q9UPM9 204 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 UGT2A1Q9Y4X1 527 aa12.32□□□□□ -0.44
VIPAS39-208ENST00000556412 MYO7BQ6PIF6 2116 aa12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 LOC100130705A0A1B0GUX0 176 aa12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 OR5H1A6NKK0 313 aa12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 DLGAP1O14490 977 aa12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 FARS2O95363 451 aaKnown RBP12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 GGT2P36268 569 aa12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 RPS7P62081 194 aaKnown RBP12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 SORDQ00796 357 aa12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 CXXC5Q7LFL8 322 aaKnown RBP12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 GLB1L2Q8IW92 636 aa12.31□□□□□ -0.44
VIPAS39-208ENST00000556412 SLC22A24Q8N4F4 322 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms