RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 TEX15Q9BXT5 2789 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 CCDC168Q8NDH2 2452 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 IMPA2O14732 288 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 PTP4A3O75365 173 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 HLA-HP01893 362 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 CD79AP11912 226 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 FUT4P22083 530 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 GSSP48637 474 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 IDH3GP51553 393 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 RPS23P62266 143 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 NPRL3Q12980 569 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 PGBD2Q6P3X8 592 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 PRSS57Q6UWY2 283 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 SLC16A14Q7RTX9 510 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 FAM122BQ7Z309 247 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 MDP1Q86V88 176 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 IGFN1Q86VF2 1251 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 CLDN22Q8N7P3 220 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 SYT14Q8NB59 555 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 NUP37Q8NFH4 326 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 IGFBPL1Q8WX77 278 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 HDAC2Q92769 488 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 NMD3Q96D46 503 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 SNX18Q96RF0 628 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 SIAEQ9HAT2 523 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 B3GNT2Q9NY97 397 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF346Q9UL40 294 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 POMPQ9Y244 141 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 SPEF1Q9Y4P9 236 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 CDH10Q9Y6N8 788 aa12.52□□□□□ -0.41
CCDC88C-207ENST00000554051 ATP6V1G2-DDX39BF2Z307 99 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 ARPC3O15145 178 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 IDH3BO43837 385 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 SEC14L2O76054 403 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 TXNDC12O95881 172 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 DANCRP0C864 163 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 PTDSS1P48651 473 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 PCBD1P61457 104 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 ERVK-25P63136 954 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 TUBA1BP68363 451 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 TUBA4AP68366 448 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 RUNX1T1Q06455 604 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 SPOCK1Q08629 439 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF620Q6ZNG0 422 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 TUBA1AQ71U36 451 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 ZER1Q7Z7L7 766 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 SPATA24Q86W54 205 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 ADGRG5Q8IZF4 528 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 OR4C15Q8NGM1 316 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 LILRB1Q8NHL6 650 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 C1QTNF6Q9BXI9 259 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 OR52D1Q9H346 318 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF442Q9H7R0 627 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 BARX1Q9HBU1 254 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 CBLN4Q9NTU7 201 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF701Q9NV72 531 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 LAMP3Q9UQV4 416 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 ATP23Q9Y6H3 246 aa12.51□□□□□ -0.41
CCDC88C-207ENST00000554051 TEX13CA0A0J9YWL9 993 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 TCRBV3S1A0A5B6 114 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 SLC22A23A1A5C7 686 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 PRSS37A4D1T9 235 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 GSC2O15499 205 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 CST1P01037 141 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 CRABP1P29762 137 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 APOBEC3AP31941 199 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 TTKP33981 857 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 RAB1AP62820 205 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 GALK2Q01415 458 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 PLP2Q04941 152 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 RFX4Q33E94 735 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 SLC25A47Q6Q0C1 308 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 UNQ6126/PRO20091Q6UXV3 157 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 FOXL2NBQ6ZUU3 175 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 JAZF1Q86VZ6 243 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 MEX3DQ86XN8 651 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 WDFY1Q8IWB7 410 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 MUC15Q8N387 334 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 OR1J2Q8NGS2 313 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 Q96M85 177 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 TRAF4Q9BUZ4 470 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 CHID1Q9BWS9 393 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 DGCR6LQ9BY27 220 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 CADM1Q9BY67 442 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 CCNB1IP1Q9NPC3 277 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 VSX1Q9NZR4 365 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 SLC7A8Q9UHI5 535 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 MOKQ9UQ07 419 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 BAIAP2Q9UQB8 552 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 ADAM18Q9Y3Q7 739 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 AKAP6Q13023 2319 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 DCHS2Q6V1P9 2916 aa12.5□□□□□ -0.41
CCDC88C-207ENST00000554051 PDZD2O15018 2839 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 DSCAMO60469 2012 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 IGHV2OR16-5A0A0B4J2B6 119 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 IQCMA0A1B0GVH7 501 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 OVOL3O00110 214 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 GNGT2O14610 69 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 CIB2O75838 187 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 SLC2A10O95528 541 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms