RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PLK3Q9H4B4 646 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 CSPG4Q6UVK1 2322 aa12.27□□□□□ -0.44
USP28-209ENST00000540925 A0A096LNT2 108 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 hCG_2039718K7EN88 272 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 MGRN1O60291 552 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 DIRAS1O95057 198 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 SLC2A10O95528 541 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 SERPINA5P05154 406 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 MMP7P09237 267 aaPredicted RBP12.27□□□□□ -0.45
USP28-209ENST00000540925 OR4A8P0C604 315 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 PATE4P0C8F1 98 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 CD79AP11912 226 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 NR4A1P22736 598 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 SERPINF1P36955 418 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 CAPZA2P47755 286 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 FXYD6P3P58550 94 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 CTXN1P60606 82 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 MRPS34P82930 218 aaKnown RBP12.27□□□□□ -0.45
USP28-209ENST00000540925 MYBPC1Q00872 1141 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 FMODQ06828 376 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 PIGFQ07326 219 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 KRTAP1-1Q07627 177 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 MSMPQ1L6U9 139 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 ZBED5Q49AG3 693 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 FAM205BPQ63HN1 556 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 FOXL2NBQ6ZUU3 175 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 FAM122BQ7Z309 247 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 IGFN1Q86VF2 1251 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 CLDN22Q8N7P3 220 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 CCDC197Q8NCU1 140 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 OR10H5Q8NGA6 315 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 OR4K5Q8NGD3 323 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 HTRA1Q92743 480 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 NSL1Q96IY1 281 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 GPX7Q96SL4 187 aaPredicted RBP12.27□□□□□ -0.45
USP28-209ENST00000540925 GPA33Q99795 319 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 SH3GL3Q99963 347 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 ADAM21Q9UKJ8 722 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 FBXL3Q9UKT7 428 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 ZNF346Q9UL40 294 aaKnown RBP12.27□□□□□ -0.45
USP28-209ENST00000540925 SIGLEC7Q9Y286 467 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 TMEM5Q9Y2B1 443 aa12.27□□□□□ -0.45
USP28-209ENST00000540925 FN1P02751 2386 aaKnown RBP12.26□□□□□ -0.45
USP28-209ENST00000540925 TMEM129A0AVI4 362 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 SH3PXD2BA1X283 911 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 B2RBV5 119 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 B9A039 149 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 ENTPD5O75356 428 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 GMNNO75496 209 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 HEXAP06865 529 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 CD14P08571 375 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 IGFBP1P08833 259 aaPredicted RBP12.26□□□□□ -0.45
USP28-209ENST00000540925 HOXB4P17483 251 aaPredicted RBP12.26□□□□□ -0.45
USP28-209ENST00000540925 THBS4P35443 961 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 PTDSS1P48651 473 aaKnown RBP12.26□□□□□ -0.45
USP28-209ENST00000540925 CHRNB3Q05901 458 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 RAB39AQ14964 217 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 THEM4Q5T1C6 240 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 DPPA2Q7Z7J5 298 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 CDK20Q8IZL9 346 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 ARHGAP24Q8N264 748 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 ARIH2OSQ8N7S6 290 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 FBXO17Q96EF6 278 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 FAM46AQ96IP4 442 aaKnown RBP12.26□□□□□ -0.45
USP28-209ENST00000540925 NSMCE2Q96MF7 247 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 SIAEQ9HAT2 523 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 IL1RAPQ9NPH3 570 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 ACTR3BQ9P1U1 418 aa12.26□□□□□ -0.45
USP28-209ENST00000540925 CR1P17927 2039 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 TCRBV5S2A0A599 114 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 A6NIZ1 184 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 FARS2O95363 451 aaKnown RBP12.25□□□□□ -0.45
USP28-209ENST00000540925 RAB36O95755 333 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 LY6G6DO95868 133 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 ITGA2P17301 1181 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 ATP6V1B2P21281 511 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 MAGEA2P43356 314 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 ZNF84P51523 738 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 EFNA4P52798 201 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 RAP1BP61224 184 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 RAP1AP62834 184 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 TOP3AQ13472 1001 aaPredicted RBP12.25□□□□□ -0.45
USP28-209ENST00000540925 DAG1Q14118 895 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 FGD3Q5JSP0 725 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 THSD4Q6ZMP0 1018 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 RINLQ6ZS11 566 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 ZER1Q7Z7L7 766 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 FNDC8Q8TC99 324 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 DOK1Q99704 481 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 NRIP3Q9NQ35 241 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 ADAM18Q9Y3Q7 739 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 FAM32AQ9Y421 112 aaKnown RBP12.25□□□□□ -0.45
USP28-209ENST00000540925 PMF1-BGLAPU3KQ54 211 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 V9GYQ6 96 aa12.25□□□□□ -0.45
USP28-209ENST00000540925 IGHV4-30-2A0A087WSY4 118 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 FAM171A2A8MVW0 826 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 RNF223E7ERA6 249 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 SSX4O60224 188 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 GPRIN2O60269 458 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 F12P00748 615 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms