RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 TCHPQ9BT92 498 aa2.39□□□□□ -2.03
CD44-215ENST00000525241 RPF2Q9H7B2 306 aaKnown RBP2.39□□□□□ -2.03
CD44-215ENST00000525241 SLC7A8Q9UHI5 535 aa2.39□□□□□ -2.03
CD44-215ENST00000525241 SHPKQ9UHJ6 478 aa2.39□□□□□ -2.03
CD44-215ENST00000525241 PSG8Q9UQ74 426 aa2.39□□□□□ -2.03
CD44-215ENST00000525241 GAKO14976 1311 aa2.39□□□□□ -2.03
CD44-215ENST00000525241 ZNF705GA8MUZ8 300 aaPredicted RBP2.38□□□□□ -2.03
CD44-215ENST00000525241 FOXH1O75593 365 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 GNAO1P09471 354 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 MUC1P15941 1255 aaPredicted RBP2.38□□□□□ -2.03
CD44-215ENST00000525241 HRH1P35367 487 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 CASC1Q6TDU7 716 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 IGFL1Q6UW32 110 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 RGS9BPQ6ZS82 235 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 ABHD13Q7L211 337 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 TBC1D21Q8IYX1 336 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 LKAAEAR1Q8TD35 194 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 STMN2Q93045 179 aa2.38□□□□□ -2.03
CD44-215ENST00000525241 PIKFYVEQ9Y2I7 2098 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 IGHV3-74A0A0B4J1X5 117 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 A0A1W2PP18 115 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 COLCA2A8K830 154 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 CXCL11O14625 94 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 GOSR2O14653 212 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 CPLX1O14810 134 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 PSTPIP1O43586 416 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 CT62P0C5K7 136 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 PSMC3P17980 439 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 GPX6P59796 221 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 ESRRGP62508 458 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 RAP1AP62834 184 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 ERCC8Q13216 396 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 PRPSAP1Q14558 356 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 CTSL3PQ5NE16 218 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 BIVMQ86UB2 503 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 ZNF615Q8N8J6 731 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 OR2L3Q8NG85 312 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 OR4S2Q8NH73 311 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 ZNF721Q8TF20 911 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 UBE2Q2Q8WVN8 375 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 PDXPQ96GD0 296 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 P2RX4Q99571 388 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 ZBTB18Q99592 522 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 CTRCQ99895 268 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 NT5C3AQ9H0P0 336 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 ISYNA1Q9NPH2 558 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 CTNNA3Q9UI47 895 aa2.37□□□□□ -2.03
CD44-215ENST00000525241 MRPS18BQ9Y676 258 aaKnown RBP2.37□□□□□ -2.03
CD44-215ENST00000525241 KANK1Q14678 1352 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 IGHV5-10-1A0A0J9YXX1 117 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 FAM240BA0A1B0GVZ2 78 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 SPECC1L-ADORA2AF8WAN1 911 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 SOX15O60248 233 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 IGHV1-8P0DP01 117 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 MX1P20591 662 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 CDKN2BP42772 138 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 TPMTP51580 245 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 SYCNQ0VAF6 134 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 PHYHD1Q5SRE7 291 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 SPECC1LQ69YQ0 1117 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 TEX43Q6ZNM6 134 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 HDDC2Q7Z4H3 204 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 EGFL6Q8IUX8 553 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 UBALD2Q8IYN6 164 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 RNF182Q8N6D2 247 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 FAM3DQ96BQ1 224 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 ZNF578Q96N58 590 aaPredicted RBP2.36□□□□□ -2.03
CD44-215ENST00000525241 CWH43Q9H720 699 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 C12orf10Q9HB07 376 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 SIRT7Q9NRC8 400 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 ZNF355PQ9NSJ1 428 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 HYPKQ9NX55 129 aa2.36□□□□□ -2.03
CD44-215ENST00000525241 SERPINE3A8MV23 424 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 GABARAPO95166 117 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 FGGP02679 453 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 FABP3P05413 133 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 CD5P06127 495 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 CRYBB2P43320 205 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 NAMPTP43490 491 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 CSNK1A1P48729 337 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 NUTF2P61970 127 aaKnown RBP2.35□□□□□ -2.03
CD44-215ENST00000525241 RPL23AP62750 156 aaKnown RBP2.35□□□□□ -2.03
CD44-215ENST00000525241 KCNJ2P63252 427 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 GINS1Q14691 196 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 DNAJC24Q6P3W2 148 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 NTM-AS1Q6ZSK4 140 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 ASCL5Q7RTU5 278 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 RIMKLAQ8IXN7 391 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 NOXO1Q8NFA2 376 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 OR10R2Q8NGX6 335 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 SYNPRQ8TBG9 265 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 PLPPR1Q8TBJ4 325 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 NT5C3BQ969T7 300 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 CREB3L1Q96BA8 519 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 PIK3IP1Q96FE7 263 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 ZNRD1Q9P1U0 126 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 EXTL2Q9UBQ6 330 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 SUN2Q9UH99 717 aa2.35□□□□□ -2.03
CD44-215ENST00000525241 GPATCH8Q9UKJ3 1502 aaKnown RBP2.35□□□□□ -2.03
CD44-215ENST00000525241 COL1A2P08123 1366 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms