RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CCT7Q99832 543 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 THUMPD2Q9BTF0 503 aaKnown RBP1.25□□□□□ -2.21
VPS50-216ENST00000484954 LHX5Q9H2C1 402 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 CGNQ9P2M7 1197 aaKnown RBP1.25□□□□□ -2.21
VPS50-216ENST00000484954 ZNF230Q9UIE0 474 aaPredicted RBP1.25□□□□□ -2.21
VPS50-216ENST00000484954 MMACHCQ9Y4U1 282 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 TBX19O60806 448 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 RHOBTB1O94844 696 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 HLA-DPB1P04440 258 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 CAPN1P07384 714 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 KRT13P13646 458 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 AK4P27144 223 aaPredicted RBP1.24□□□□□ -2.21
VPS50-216ENST00000484954 CDKN1BP46527 198 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 RORCP51449 518 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 CDK16Q00536 496 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 IL15RAQ13261 267 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 MAB21L1Q13394 359 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 MESDQ14696 234 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 TPD52L1Q16890 204 aaPredicted RBP1.24□□□□□ -2.21
VPS50-216ENST00000484954 SLC36A3Q495N2 470 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 FILIP1LQ4L180 1135 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 SMUG1Q53HV7 270 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 ZNF683Q8IZ20 524 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 LRRC52Q8N7C0 313 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 MFSD9Q8NBP5 474 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 GMCL1P1Q8NEA9 526 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 NOXO1Q8NFA2 376 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 OR8U1Q8NH10 309 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 OR4S2Q8NH73 311 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 LINC01560Q8TB33 94 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 ABHD3Q8WU67 409 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 TMEM54Q969K7 222 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.24□□□□□ -2.21
VPS50-216ENST00000484954 SYAP1Q96A49 352 aaPredicted RBP1.24□□□□□ -2.21
VPS50-216ENST00000484954 C16orf45Q96MC5 204 aaPredicted RBP1.24□□□□□ -2.21
VPS50-216ENST00000484954 COL21A1Q96P44 957 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 MTMR9Q96QG7 549 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 OR8B4Q96RC9 309 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 ZSCAN5AQ9BUG6 496 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 SMOXQ9NWM0 555 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 AP1M2Q9Y6Q5 423 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 MUC6Q6W4X9 2439 aa1.24□□□□□ -2.21
VPS50-216ENST00000484954 IGKV2-24A0A0C4DH68 120 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 A0A0U1RQV1 116 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 MBLAC1A4D2B0 266 aaPredicted RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 SPECC1L-ADORA2AF8WAN1 911 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 MGRN1O60291 552 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 PEX11AO75192 247 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 GUCA1CO95843 209 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 IGHV2-5P01817 119 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 APCSP02743 223 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 HSMCR30P0CW71 290 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 C1GALT1C1LP0DN25 315 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 NCK1P16333 377 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 LGALS3P17931 250 aaKnown RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 HRH1P35367 487 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 CHI3L1P36222 383 aaPredicted RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 DUSP3P51452 185 aaPredicted RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 ARG2P78540 354 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 PON2Q15165 354 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 RGNQ15493 299 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 PDK4Q16654 411 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 DGUOKQ16854 277 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 KLHL38Q2WGJ6 581 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 NADK2Q4G0N4 442 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 SFT2D3Q587I9 215 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 SPECC1LQ69YQ0 1117 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 ZFP1Q6P2D0 407 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 UNQ9165/PRO28630Q6UXU0 137 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 ABHD13Q7L211 337 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 NUDCD3Q8IVD9 361 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 OR2T3Q8NH03 318 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 OR1P1Q8NH06 330 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 MAGEE2Q8TD90 523 aaPredicted RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 RTN4IP1Q8WWV3 396 aaPredicted RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 SORT1Q99523 831 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 TPPP3Q9BW30 176 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 SAV1Q9H4B6 383 aaPredicted RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 RPF2Q9H7B2 306 aaKnown RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 RMND5AQ9H871 391 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 FN3KRPQ9HA64 309 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 FBXO6Q9NRD1 293 aaPredicted RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 TMOD2Q9NZR1 351 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 BFARQ9NZS9 450 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 EPS15L1Q9UBC2 864 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 DHCR7Q9UBM7 475 aaKnown RBP1.23□□□□□ -2.21
VPS50-216ENST00000484954 RNF14Q9UBS8 474 aa1.23□□□□□ -2.21
VPS50-216ENST00000484954 SCN4AP35499 1836 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 A0A1W2PNN7 141 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 K7EQM0 130 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 MRPS12O15235 138 aaKnown RBP1.22□□□□□ -2.21
VPS50-216ENST00000484954 CHST1O43916 411 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 RPA2P15927 270 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 MAS1LP35410 378 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 TGFBR1P36897 503 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 CXCL12P48061 93 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 ZNF138P52744 262 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 CBX1P83916 185 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 ZSCAN26Q16670 478 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 RABL6Q3YEC7 729 aaPredicted RBP1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms